Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02272 ATGAAGAGACAGAGAGAAATGGAGGGATTTTCAAGCATAGATTTGGCTAATTGTCTAATGCTTCTGTCATGCCCCCAACAAAAGAAGTTAGAAAGAAAAGATGTTGAGGGTGTGGAATTTGAGTGCAAGACATGCAACCGAAAGTTCTCATCTTTTCAGGCATTGGGTGGGCATAGGGCTAGCCACAAAAGGTCGAAACTTGAGGGAGATGAACTCAAAGCACACGCTATAGCTCTGAGTTTGGGAATTAAGAAACCCAAAACGCACGAGTGTAGCATTTGTGGACAAGAATTCTCATTGGGACAAGCACTTGGAGGGCACATGAGAAGGCATAGAGCTTCTTCCATTAATGAAGATTTTTCTTCAAATAAACATGTTGTTGCAGAAGTAGCAGTTTTGAAAAGATCAAATAGCAGTAGGGGTATGTGCATGGACTTGAACCTAACACCGTTGGAGAATGACTTCAAGTTATTGTTTGGAAAAATGCCACTCAATGCTGCTGCCCTAGTCTGA 513 0.4191 MKRQREMEGFSSIDLANCLMLLSCPQQKKLERKDVEGVEFECKTCNRKFSSFQALGGHRASHKRSKLEGDELKAHAIALSLGIKKPKTHECSICGQEFSLGQALGGHMRRHRASSINEDFSSNKHVVAEVAVLKRSNSSRGMCMDLNLTPLENDFKLLFGKMPLNAAALV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02272 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Viun1g02272 170 PANTHER ZINC FINGER PROTEIN ZAT5 13 153 - -
Viun1g02272 170 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Viun1g02272 170 Pfam C2H2-type zinc finger 40 64 - -
Viun1g02272 170 Pfam C2H2-type zinc finger 89 113 - -
Viun1g02272 170 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Viun1g02272 170 SUPERFAMILY beta-beta-alpha zinc fingers 40 111 IPR036236 -
Viun1g02272 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Viun1g02272 170 SMART c2h2final6 40 62 IPR013087 -
Viun1g02272 170 SMART c2h2final6 89 111 IPR013087 -
Viun1g02272 170 Gene3D Classic Zinc Finger 38 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02272 Viun-Chr1 33575332 33576119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02272 1 161 C2H2 Transcription Factor Family AT2G37430 49.412 1.08e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02272 zf-C2H2_6 4.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02272 - - gmx:100806997 257.684