Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02247 ATGGTACAAGCCAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTGCTCAAGAGAAGGGTGTGGCTTGGGACCTTTGAGACAGCTGAGGCTGCAGCAAGGGCTTATGATCAAGCAGCCATTTTGATGAACGGTCAGAATGCCAAGACTAACTTCCCCACTTCAAAGAACCACCCTCAACCTGACTCCGCCGCCGCCGCCGCCGCTGCCACTTCTTCTGCTGCTGCTTCTGACAACGCTTTCTTATCTCCCAAAGCTCTTTCCGAACTCCTCAGCACAAAGCTCAGAAAGTACTGCAAAGACCCTGCCCCTTCCCTCACCTGTCTCAGGCTCGATGCTGATAACTCCCACATTGGAGTGTGGCAGAAAGGTGCAGGACCACATTCTGGCTCCAGCTGGGTCATGAGGGTCGAGCTTGGCAAGAAGCAGACCCAGGGTGAATCAGCATGGTCCCCCAACAGTGGTGCTAATCACACTGCTGCAAACAGTGAAGTAGTCGTAGAAGAAGAAGAAGAGGAAGAAGAAGAGGATACACTCGCTCTGCAGATGATCGAGGAGCTACTCAATTGGAACTAG 606 0.5314 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNHPQPDSAAAAAAATSSAAASDNAFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSSWVMRVELGKKQTQGESAWSPNSGANHTAANSEVVVEEEEEEEEEDTLALQMIEELLNWN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02247 201 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Viun1g02247 201 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Viun1g02247 201 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Viun1g02247 201 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Viun1g02247 201 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Viun1g02247 201 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Viun1g02247 201 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 168 - -
Viun1g02247 201 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Viun1g02247 201 MobiDBLite consensus disorder prediction 154 171 - -
Viun1g02247 201 Coils Coil 177 197 - -
Viun1g02247 201 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Viun1g02247 201 MobiDBLite consensus disorder prediction 153 174 - -
Viun1g02247 201 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02247 Viun-Chr1 33417216 33418393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02247 1 200 AP2-EREBP Transcription Factor Family AT5G25390 58.000 6.86e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g02247 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02247 - - gmx:100806821 284.648