Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02231 ATGGCTTTTATGCCTGGACTTCAGCGCCTACTTCGTCACACCCCACTTCTTCCTTCGCACCATGATTCCATTCGTTTAGCCTCAACTCTCACTTCACCCAAACTTTTCGTCAGCGGTCTCTCTAGATTAACAACAGATGAAAAACTTAAGGAAGCATTTTCTTCATTTGGGCAACTGGTTGAAGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTTGCCTTTGTTACCTATACAAGCATAGAAGAAGCTGAAAAGGCTAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCTAAACCAAGAGAGCCCAGACCTCCTCAGCATTCACGGCCCCAACCCTCTGAATCAGGTTTCACTATTAACAAAACAGTTGGGTGGTGTGGTTGA 414 0.4348 MAFMPGLQRLLRHTPLLPSHHDSIRLASTLTSPKLFVSGLSRLTTDEKLKEAFSSFGQLVEVITDRASGRSKGFAFVTYTSIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQHSRPQPSESGFTINKTVGWCG 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02231 137 MobiDBLite consensus disorder prediction 108 137 - -
Viun1g02231 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 109 IPR000504 GO:0003723
Viun1g02231 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 99 IPR000504 GO:0003723
Viun1g02231 137 PANTHER NUCLEOLAR PROTEIN 8 18 136 - -
Viun1g02231 137 SUPERFAMILY RNA-binding domain, RBD 30 128 IPR035979 GO:0003676
Viun1g02231 137 Gene3D - 18 120 IPR012677 -
Viun1g02231 137 SMART rrm1_1 34 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02231 Viun-Chr1 33347959 33350356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02231 35 124 Eukaryotic Initiation Factors Gene Family AT3G16380 34.043 9.34e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02231 - - gmx:100306326 224.557