Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02229 ATGGCTTTTATGCCTGGACTTCAGCGCCTACTTCGTCACACCCCACTTCTTCCTTCGCACCATGATTCCATTCGTTTAGCCTCAACTCTCACTTCACCCAAACTTTTCGTCAGCGGTCTCTCTAGATTAACAACAGATGAAAAACTTAAGGAAGCATTTTCTTCATTTGGGCAACTGGTTGAAGCTAAAGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTTGCCTTTGTTACCTATACAAGCATAGAAGAAGCTGAAAAGGCTAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCTAAACCAAGAGAGCCCAGACCTCCTCAGCATTCACGGCCCCAACCCTCTGAATCAGGTTTCACTATTAACAAAACAGTTGGGTGGTGTGGTTGA 420 0.4333 MAFMPGLQRLLRHTPLLPSHHDSIRLASTLTSPKLFVSGLSRLTTDEKLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTSIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQHSRPQPSESGFTINKTVGWCG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02229 139 MobiDBLite consensus disorder prediction 110 139 - -
Viun1g02229 139 Gene3D - 22 131 IPR012677 -
Viun1g02229 139 FunFam RNA binding protein 20 133 - -
Viun1g02229 139 SUPERFAMILY RNA-binding domain, RBD 30 130 IPR035979 GO:0003676
Viun1g02229 139 PANTHER NUCLEOLAR PROTEIN 8 18 138 - -
Viun1g02229 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Viun1g02229 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Viun1g02229 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02229 Viun-Chr1 33346233 33350356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02229 35 126 Eukaryotic Initiation Factors Gene Family AT3G16380 36.842 9.91e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02229 - - gmx:100306326 233.032