Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02228 ATGGCTTCGCGGCGGCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTCGACTGTTCCCAGAAGAATCCGCAATGGGCGTCGGTGTCGTACGGAGTATTTATGTGCTTGGAGTGCTCCGGCAAGCACCGTGGCCTCGGGGTTCACATCTCCTTCGTTCGATCCGTCACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAAGCTGGAGGCAACGACAAACTCAACGCCTTCCTCGCGCAATACGGCATCGCCAAGGAAACCGACATCGTCGTCAAGTACAATTCCAACGCCGCCTCCGTCTACCGCGACCGCATCCAGGCCATCGCCGACGGTCGCCCCTGGCGGGATCCCCCCGTCCTCAAGGAGACCGTCCGCTCCGCCTCCTTCTCCAAGGGGAAGCCGCCCCTTTCCACCAGCAACAACGGCGGCTGGGATAATTGGGACACGGACGACGGGTTCGGATCGGCTCGGGGCGGCTCTGATCTGCGGCGGAACCAGTCCACCGGCGATGTCAGGGGTTTCGGCGGAAGCGGGAGCGTGTCGAGGTCGAAGTCGACGGAGGATATGTACACGCGCGCACAGCTGGAAGCCTCTGCTGCCAATAAGGAAGATTTCTTTGCGAGGAAGAGGGCGGAGAATGACTCGCGACCGGAGGGGCTTCCGCCATCGCAGGGTGGCAAGTACGTCGGGTTCGGATCTGGCCCCGCCCCGAGCCAAAAGGCTAATCCGCAAAACGATTATTTATCTGTCGTTTCTCAGGGATTCGGTAAATTATCGTTGGTTGCTGCTTCTGCGGCTCAGTCTGCTGCCAATGTTGTTCAGGCCGGGACAAAAGAGATCTCTGCTAAGGTAAAAGAGGGTGGTTACGAATACAAGGTCAATGAAACTGTAAATGTCGTCTCTCAGAAGACATCAGAGATTGGACATAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTACGCAAAAGGTTGAAGAATACACTAGAGATAACCCCAATTCGACAAATGAAACTGATAAAAACAACGGTTTCTATCAGGAGAATAATCGAGACAACAAAGGCTGGAATTCATCTTCCAGAGAAGGGCAACACTCTACAGGTGGACAAACTAGTTCTTATAATTCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAACAGCCACAGCCACAGCCGGCTAAAGGATCACCTCATCAGTCATCAGGTGGGCAATCTGATGCTTATAACTCTAGCTCTTGGGATGATTGGGACCATGAAGATACAAGGAAGAAAGACGCAGCTAAAGGATCAGCTTCTCATAGCAATGATGGTTGGGCTGGTTGGGATAATGCCAAAGATGATGGATTTGATGATTTCTATGGGAATGCATCTAATAATAAAGCTGCTGGTCAAAATGAGAAGGCGGGTGTTGCCTGGACAGGAGGAGGTTTTCACTAA 1467 0.529 MASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLAQYGIAKETDIVVKYNSNAASVYRDRIQAIADGRPWRDPPVLKETVRSASFSKGKPPLSTSNNGGWDNWDTDDGFGSARGGSDLRRNQSTGDVRGFGGSGSVSRSKSTEDMYTRAQLEASAANKEDFFARKRAENDSRPEGLPPSQGGKYVGFGSGPAPSQKANPQNDYLSVVSQGFGKLSLVAASAAQSAANVVQAGTKEISAKVKEGGYEYKVNETVNVVSQKTSEIGHRTWGIMRGVMAMATQKVEEYTRDNPNSTNETDKNNGFYQENNRDNKGWNSSSREGQHSTGGQTSSYNSSSWDDWDHKDSRKEQPQPQPAKGSPHQSSGGQSDAYNSSSWDDWDHEDTRKKDAAKGSASHSNDGWAGWDNAKDDGFDDFYGNASNNKAAGQNEKAGVAWTGGGFH 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02228 488 MobiDBLite consensus disorder prediction 422 440 - -
Viun1g02228 488 ProSiteProfiles ARF GTPase-activating proteins domain profile. 3 83 IPR001164 GO:0005096
Viun1g02228 488 MobiDBLite consensus disorder prediction 334 384 - -
Viun1g02228 488 Gene3D Arf GTPase activating protein 1 123 IPR038508 -
Viun1g02228 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 399 IPR044519 GO:0005096|GO:0016192
Viun1g02228 488 SUPERFAMILY ArfGap/RecO-like zinc finger 3 110 IPR037278 -
Viun1g02228 488 SMART arf_gap_3 3 119 IPR001164 GO:0005096
Viun1g02228 488 CDD ArfGap_ArfGap1 2 116 - -
Viun1g02228 488 MobiDBLite consensus disorder prediction 165 194 - -
Viun1g02228 488 MobiDBLite consensus disorder prediction 215 248 - -
Viun1g02228 488 MobiDBLite consensus disorder prediction 130 194 - -
Viun1g02228 488 Pfam Putative GTPase activating protein for Arf 4 98 IPR001164 GO:0005096
Viun1g02228 488 MobiDBLite consensus disorder prediction 334 488 - -
Viun1g02228 488 PRINTS HIV Rev interacting protein signature 15 34 IPR001164 GO:0005096
Viun1g02228 488 PRINTS HIV Rev interacting protein signature 55 76 IPR001164 GO:0005096
Viun1g02228 488 PRINTS HIV Rev interacting protein signature 34 51 IPR001164 GO:0005096
Viun1g02228 488 MobiDBLite consensus disorder prediction 399 421 - -
Viun1g02228 488 FunFam ADP-ribosylation factor GTPase-activating protein 1 128 - -
Viun1g02228 488 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02228 Viun-Chr1 33335217 33340128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02228 4 86 C2H2 Transcription Factor Family AT4G21160 48.810 8.13e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02228 K12492 - gmx:100778302 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02228 1 33335217 33340128 Viun1g02228 1 33335217 33340128 ECH