Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02220 ATGGACGACAACAACAACCCATACCCCATTCTCACGCCTTCGGGATTACCTCGCCAAAGCAAACCCTCTATTGCAGAGGACGATGTCATGGAGCTGCTATGGCATAACGGCCAGGTTGTGATGCAGAGTCAGAATCACCGTTCCCTTAGAAAACCCACGCCGCCGTCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCTTCCGAATCCAGGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCCTGGCTTCACTATCCAATCGACGACGACGACGACGTACCTCCGTTGGATCAGGCTTTCTGCGCCGATTTCCTCTACTCGCCGCCCACCGTTAACAACAGCACGGCCATGCAAACTCTCGCCACGTCTCAGCTCACAGACCACCGCCCCATGTCCGCACCGCCTCGACCTCCAATTCCGCTGCCGAGACGGCTGGAACCGAAGACGCCGAACTTCGCGTACTTCGCCAGGCACAACACAAGAGCCGACGAGCAGAGCGTGAAGGTGGCCGCGAAGGAATCCACAGTGGTGGATTCGTGCGAGACGCCGGCCGCAACCGCAGCGGCGGTTTCGAGAGTTTCGGAAACTGTGAGGAACGCGGTGGAAGCGACGGAAGGAGGCGCCGGAGCTCCGGTGCCTTCGACGAGTGGCGGTGGCGGTAGGAGCACGATGATGTGCGACGTGACTATGGCTTCGTCGCCGGGCGGCTCGAGTAGTAGCGGCGAGCCGGTTCAGGTGGCGCCGGCGGAAGAGCGGAAGCGGAAGGGTCGGGAGGCGGAGGGATGGGAGTCTCAGAGCGAGGGTACGCATGTAAATGGAGGAGTAAAGGATGTTGATTTTGAATCGGAAGCAAAGAAGCAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTGCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAATCATTGCAGTTACAAGTGCAGATGATGTCGATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATTCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGAATGGGAATGGAAATGGGAATGAACAGACCTGTGATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCGGCAGCAACAGCAGCTGCTCATTTGGGACCAAGGTTTCCGATGCCTCCTTTCCACATGCCGCGTGTTCCTGCTCCTGATTCTTCCAGAATGCAACCAGAAAATCAGTCAGATAATAATAATAATATGGTTGCACCTGCTCCACCTCATCCAAACCAGTCACGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAAGTAATTCAGAATCAGGCAATGAACCAACCAAATGTTGGGAAGCCCAGTACCAGTAGGGATAATCCAGAAAATCGTTAG 1554 0.5347 MDDNNNPYPILTPSGLPRQSKPSIAEDDVMELLWHNGQVVMQSQNHRSLRKPTPPSRNSHDASAAGPSESREIRPQLDNFNQHLFMQEGEMASWLHYPIDDDDDVPPLDQAFCADFLYSPPTVNNSTAMQTLATSQLTDHRPMSAPPRPPIPLPRRLEPKTPNFAYFARHNTRADEQSVKVAAKESTVVDSCETPAATAAAVSRVSETVRNAVEATEGGAGAPVPSTSGGGGRSTMMCDVTMASSPGGSSSSGEPVQVAPAEERKRKGREAEGWESQSEGTHVNGGVKDVDFESEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPAPDSSRMQPENQSDNNNNMVAPAPPHPNQSRLPNFTDPYQQYLGPHQMQFQVIQNQAMNQPNVGKPSTSRDNPENR 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02220 517 MobiDBLite consensus disorder prediction 286 302 - -
Viun1g02220 517 MobiDBLite consensus disorder prediction 259 276 - -
Viun1g02220 517 MobiDBLite consensus disorder prediction 433 517 - -
Viun1g02220 517 MobiDBLite consensus disorder prediction 40 73 - -
Viun1g02220 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 376 IPR036638 GO:0046983
Viun1g02220 517 Pfam Helix-loop-helix DNA-binding domain 314 360 IPR011598 GO:0046983
Viun1g02220 517 MobiDBLite consensus disorder prediction 446 466 - -
Viun1g02220 517 PANTHER TRANSCRIPTION FACTOR PIF3 20 129 IPR044273 GO:0003700|GO:0006355
Viun1g02220 517 MobiDBLite consensus disorder prediction 213 318 - -
Viun1g02220 517 MobiDBLite consensus disorder prediction 40 65 - -
Viun1g02220 517 MobiDBLite consensus disorder prediction 228 256 - -
Viun1g02220 517 MobiDBLite consensus disorder prediction 1 19 - -
Viun1g02220 517 MobiDBLite consensus disorder prediction 1 24 - -
Viun1g02220 517 CDD bHLH_AtPIF_like 310 373 IPR047265 -
Viun1g02220 517 MobiDBLite consensus disorder prediction 135 158 - -
Viun1g02220 517 MobiDBLite consensus disorder prediction 143 157 - -
Viun1g02220 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Viun1g02220 517 SMART finulus 316 365 IPR011598 GO:0046983
Viun1g02220 517 FunFam Basic helix-loop-helix transcription factor 305 368 - -
Viun1g02220 517 MobiDBLite consensus disorder prediction 473 511 - -
Viun1g02220 517 Gene3D - 305 368 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02220 Viun-Chr1 33237207 33241029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02220 26 485 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 36.250 8.53e-63 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g02220 HLH 6.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02220 - - gmx:100797225 704.901