Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02219 ATGACCAATCACAATCACTCTGTTCCAGATTTCGATATTCAAATGGACGACAACAACAACCCATACCCCATTCTCACGCCTTCGGGATTACCTCGCCAAAGCAAACCCTCTATTGCAGAGGACGATGTCATGGAGCTGCTATGGCATAACGGCCAGGTTGTGATGCAGAGTCAGAATCACCGTTCCCTTAGAAAACCCACGCCGCCGTCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCTTCCGAATCCAGGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCCTGGCTTCACTATCCAATCGACGACGACGACGACGTACCTCCGTTGGATCAGGCTTTCTGCGCCGATTTCCTCTACTCGCCGCCCACCGTTAACAACAGCACGGCCATGCAAACTCTCGCCACGTCTCAGCTCACAGACCACCGCCCCATGTCCGCACCGCCTCGACCTCCAATTCCGCTGCCGAGACGGCTGGAACCGAAGACGCCGAACTTCGCGTACTTCGCCAGGCACAACACAAGAGCCGACGAGCAGAGCGTGAAGGTGGCCGCGAAGGAATCCACAGTGGTGGATTCGTGCGAGACGCCGGCCGCAACCGCAGCGGCGGTTTCGAGAGTTTCGGAAACTGTGAGGAACGCGGTGGAAGCGACGGAAGGAGGCGCCGGAGCTCCGGTGCCTTCGACGAGTGGCGGTGGCGGTAGGAGCACGATGATGTGCGACGTGACTATGGCTTCGTCGCCGGGCGGCTCGAGTAGTAGCGGCGAGCCGGTTCAGGTGGCGCCGGCGGAAGAGCGGAAGCGGAAGGGTCGGGAGGCGGAGGGATGGGAGTCTCAGAGCGAGGATGTTGATTTTGAATCGGAAGCAAAGAAGCAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTGCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAATCATTGCAGTTACAAGTGCAGATGATGTCGATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATTCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGAATGGGAATGGAAATGGGAATGAACAGACCTGTGATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCGGCAGCAACAGCAGCTGCTCATTTGGGACCAAGGTTTCCGATGCCTCCTTTCCACATGCCGCGTGTTCCTGCTCCTGATTCTTCCAGAATGCAACCAGAAAATCAGTCAGATAATAATAATAATATGGTTGCACCTGCTCCACCTCATCCAAACCAGTCACGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAAGTAATTCAGAATCAGGCAATGAACCAACCAAATGTTGGGAAGCCCAGTACCAGTAGGGATAATCCAGAAAATCGTTAG 1569 0.5315 MTNHNHSVPDFDIQMDDNNNPYPILTPSGLPRQSKPSIAEDDVMELLWHNGQVVMQSQNHRSLRKPTPPSRNSHDASAAGPSESREIRPQLDNFNQHLFMQEGEMASWLHYPIDDDDDVPPLDQAFCADFLYSPPTVNNSTAMQTLATSQLTDHRPMSAPPRPPIPLPRRLEPKTPNFAYFARHNTRADEQSVKVAAKESTVVDSCETPAATAAAVSRVSETVRNAVEATEGGAGAPVPSTSGGGGRSTMMCDVTMASSPGGSSSSGEPVQVAPAEERKRKGREAEGWESQSEDVDFESEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPAPDSSRMQPENQSDNNNNMVAPAPPHPNQSRLPNFTDPYQQYLGPHQMQFQVIQNQAMNQPNVGKPSTSRDNPENR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02219 522 MobiDBLite consensus disorder prediction 55 87 - -
Viun1g02219 522 MobiDBLite consensus disorder prediction 149 172 - -
Viun1g02219 522 MobiDBLite consensus disorder prediction 478 516 - -
Viun1g02219 522 MobiDBLite consensus disorder prediction 157 171 - -
Viun1g02219 522 Pfam Helix-loop-helix DNA-binding domain 319 365 IPR011598 GO:0046983
Viun1g02219 522 MobiDBLite consensus disorder prediction 55 79 - -
Viun1g02219 522 MobiDBLite consensus disorder prediction 438 522 - -
Viun1g02219 522 PANTHER TRANSCRIPTION FACTOR PIF3 34 150 IPR044273 GO:0003700|GO:0006355
Viun1g02219 522 SMART finulus 321 370 IPR011598 GO:0046983
Viun1g02219 522 MobiDBLite consensus disorder prediction 273 307 - -
Viun1g02219 522 MobiDBLite consensus disorder prediction 1 36 - -
Viun1g02219 522 MobiDBLite consensus disorder prediction 227 329 - -
Viun1g02219 522 MobiDBLite consensus disorder prediction 1 33 - -
Viun1g02219 522 Gene3D - 310 373 IPR036638 GO:0046983
Viun1g02219 522 MobiDBLite consensus disorder prediction 451 471 - -
Viun1g02219 522 CDD bHLH_AtPIF_like 315 378 IPR047265 -
Viun1g02219 522 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 364 IPR011598 GO:0046983
Viun1g02219 522 FunFam Basic helix-loop-helix transcription factor 310 373 - -
Viun1g02219 522 MobiDBLite consensus disorder prediction 242 270 - -
Viun1g02219 522 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 381 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02219 Viun-Chr1 33237207 33241029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02219 5 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.092 4.24e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g02219 HLH 6.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02219 - - gmx:100797225 734.947