Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02216 ATGACCAATCACAATCACTCTGTTCCAGATTTCGATATTCAAATGGACGACAACAACAACCCATACCCCATTCTCACGCCTTCGGGATTACCTCGCCAAAGCAAACCCTCTATTGCAGAGGACGATGTCATGGAGCTGCTATGGCATAACGGCCAGGTTGTGATGCAGAGTCAGAATCACCGTTCCCTTAGAAAACCCACGCCGCCGTCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCTTCCGAATCCAGGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCCTGGCTTCACTATCCAATCGACGACGACGACGACGTACCTCCGTTGGATCAGGCTTTCTGCGCCGATTTCCTCTACTCGCCGCCCACCGTTAACAACAGCACGGCCATGCAAACTCTCGCCACGTCTCAGCTCACAGACCACCGCCCCATGTCCGCACCGCCTCGACCTCCAATTCCGCTGCCGAGACGGCTGGAACCGAAGACGCCGAACTTCGCGTACTTCGCCAGGCACAACACAAGAGCCGACGAGCAGAGCGTGAAGGTGGCCGCGAAGGAATCCACAGTGGTGGATTCGTGCGAGACGCCGGCCGCAACCGCAGCGGCGGTTTCGAGAGTTTCGGAAACTGTGAGGAACGCGGTGGAAGCGACGGAAGGAGGCGCCGGAGCTCCGGTGCCTTCGACGAGTGGCGGTGGCGGTAGGAGCACGATGATGTGCGACGTGACTATGGCTTCGTCGCCGGGCGGCTCGAGTAGTAGCGGCGAGCCGGTTCAGGTGGCGCCGGCGGAAGAGCGGAAGCGGAAGGGTCGGGAGGCGGAGGGATGGGAGTCTCAGAGCGAGGGTACGCATGTAAATGGAGGAGTAAAGGATGTTGATTTTGAATCGGAAGCAAAGAAGCAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTGCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAATCATTGCAGTTACAAGTGCAGATGATGTCGATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATTCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGAATGGGAATGGAAATGGGAATGAACAGACCTGTGATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCGGCAGCAACAGCAGCTGCTCATTTGGGACCAAGGTTTCCGATGCCTCCTTTCCACATGCCGCGTGTTCCTGCTCCTGATTCTTCCAGAATGCAACCAGAAAATCAGTCAGATAATAATAATAATATGGTTGCACCTGCTCCACCTCATCCAAACCAGTCACGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAAGTAATTCAGAATCAGGCAATGAACCAACCAAATGTTGGGAAGCCCAGTACCAGTAGGGATAATCCAGAAAATCGTTAG 1596 0.5301 MTNHNHSVPDFDIQMDDNNNPYPILTPSGLPRQSKPSIAEDDVMELLWHNGQVVMQSQNHRSLRKPTPPSRNSHDASAAGPSESREIRPQLDNFNQHLFMQEGEMASWLHYPIDDDDDVPPLDQAFCADFLYSPPTVNNSTAMQTLATSQLTDHRPMSAPPRPPIPLPRRLEPKTPNFAYFARHNTRADEQSVKVAAKESTVVDSCETPAATAAAVSRVSETVRNAVEATEGGAGAPVPSTSGGGGRSTMMCDVTMASSPGGSSSSGEPVQVAPAEERKRKGREAEGWESQSEGTHVNGGVKDVDFESEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPAPDSSRMQPENQSDNNNNMVAPAPPHPNQSRLPNFTDPYQQYLGPHQMQFQVIQNQAMNQPNVGKPSTSRDNPENR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02216 531 CDD bHLH_AtPIF_like 324 387 IPR047265 -
Viun1g02216 531 MobiDBLite consensus disorder prediction 487 525 - -
Viun1g02216 531 PANTHER TRANSCRIPTION FACTOR PIF3 34 515 IPR044273 GO:0003700|GO:0006355
Viun1g02216 531 MobiDBLite consensus disorder prediction 55 87 - -
Viun1g02216 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 390 IPR036638 GO:0046983
Viun1g02216 531 MobiDBLite consensus disorder prediction 149 172 - -
Viun1g02216 531 MobiDBLite consensus disorder prediction 157 171 - -
Viun1g02216 531 FunFam Basic helix-loop-helix transcription factor 319 382 - -
Viun1g02216 531 MobiDBLite consensus disorder prediction 55 79 - -
Viun1g02216 531 MobiDBLite consensus disorder prediction 300 316 - -
Viun1g02216 531 MobiDBLite consensus disorder prediction 1 36 - -
Viun1g02216 531 MobiDBLite consensus disorder prediction 1 33 - -
Viun1g02216 531 MobiDBLite consensus disorder prediction 273 290 - -
Viun1g02216 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 373 IPR011598 GO:0046983
Viun1g02216 531 MobiDBLite consensus disorder prediction 447 531 - -
Viun1g02216 531 Pfam Helix-loop-helix DNA-binding domain 328 374 IPR011598 GO:0046983
Viun1g02216 531 SMART finulus 330 379 IPR011598 GO:0046983
Viun1g02216 531 Gene3D - 319 382 IPR036638 GO:0046983
Viun1g02216 531 MobiDBLite consensus disorder prediction 460 480 - -
Viun1g02216 531 MobiDBLite consensus disorder prediction 242 270 - -
Viun1g02216 531 MobiDBLite consensus disorder prediction 227 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02216 Viun-Chr1 33237206 33241587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02216 5 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.147 7.70e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g02216 HLH 6.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02216 - - gmx:100797225 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02216 1 33237206 33241587 Viun1g02216 1 33237206 33241587 ECH
Viun1g02216 1 33237206 33241587 Viun7g01179 7 13349132 13354678 PCT