Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02215 ATGGAGCTGCTATGGCATAACGGCCAGGTTGTGATGCAGAGTCAGAATCACCGTTCCCTTAGAAAACCCACGCCGCCGTCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCTTCCGAATCCAGGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCCTGGCTTCACTATCCAATCGACGACGACGACGACGTACCTCCGTTGGATCAGGCTTTCTGCGCCGATTTCCTCTACTCGCCGCCCACCGTTAACAACAGCACGGCCATGCAAACTCTCGCCACGTCTCAGCTCACAGACCACCGCCCCATGTCCGCACCGCCTCGACCTCCAATTCCGCTGCCGAGACGGCTGGAACCGAAGACGCCGAACTTCGCGTACTTCGCCAGGCACAACACAAGAGCCGACGAGCAGAGCGTGAAGGTGGCCGCGAAGGAATCCACAGTGGTGGATTCGTGCGAGACGCCGGCCGCAACCGCAGCGGCGGTTTCGAGAGTTTCGGAAACTGTGAGGAACGCGGTGGAAGCGACGGAAGGAGGCGCCGGAGCTCCGGTGCCTTCGACGAGTGGCGGTGGCGGTAGGAGCACGATGATGTGCGACGTGACTATGGCTTCGTCGCCGGGCGGCTCGAGTAGTAGCGGCGAGCCGGTTCAGGTGGCGCCGGCGGAAGAGCGGAAGCGGAAGGGTCGGGAGGCGGAGGGATGGGAGTCTCAGAGCGAGGGTACGCATGTAAATGGAGGAGTAAAGGATGTTGATTTTGAATCGGAAGCAAAGAAGCAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTGCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAATCATTGCAGTTACAAGTGCAGATGATGTCGATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATTCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGAATGGGAATGGAAATGGGAATGAACAGACCTGTGATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCGGCAGCAACAGCAGCTGCTCATTTGGGACCAAGGTTTCCGATGCCTCCTTTCCACATGCCGCGTGTTCCTGCTCCTGATTCTTCCAGAATGCAACCAGAAAATCAGTCAGATAATAATAATAATATGGTTGCACCTGCTCCACCTCATCCAAACCAGTCACGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAAGTAATTCAGAATCAGGCAATGAACCAACCAAATGTTGGGAAGCCCAGTACCAGTAGGGATAATCCAGAAAATCGTTAG 1467 0.5358 MELLWHNGQVVMQSQNHRSLRKPTPPSRNSHDASAAGPSESREIRPQLDNFNQHLFMQEGEMASWLHYPIDDDDDVPPLDQAFCADFLYSPPTVNNSTAMQTLATSQLTDHRPMSAPPRPPIPLPRRLEPKTPNFAYFARHNTRADEQSVKVAAKESTVVDSCETPAATAAAVSRVSETVRNAVEATEGGAGAPVPSTSGGGGRSTMMCDVTMASSPGGSSSSGEPVQVAPAEERKRKGREAEGWESQSEGTHVNGGVKDVDFESEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPAPDSSRMQPENQSDNNNNMVAPAPPHPNQSRLPNFTDPYQQYLGPHQMQFQVIQNQAMNQPNVGKPSTSRDNPENR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02215 488 MobiDBLite consensus disorder prediction 114 128 - -
Viun1g02215 488 Gene3D - 276 339 IPR036638 GO:0046983
Viun1g02215 488 MobiDBLite consensus disorder prediction 417 437 - -
Viun1g02215 488 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Viun1g02215 488 MobiDBLite consensus disorder prediction 257 273 - -
Viun1g02215 488 FunFam Basic helix-loop-helix transcription factor 276 339 - -
Viun1g02215 488 MobiDBLite consensus disorder prediction 12 44 - -
Viun1g02215 488 CDD bHLH_AtPIF_like 281 344 IPR047265 -
Viun1g02215 488 PANTHER TRANSCRIPTION FACTOR PIF3 1 472 IPR044273 GO:0003700|GO:0006355
Viun1g02215 488 MobiDBLite consensus disorder prediction 230 247 - -
Viun1g02215 488 MobiDBLite consensus disorder prediction 199 227 - -
Viun1g02215 488 MobiDBLite consensus disorder prediction 184 289 - -
Viun1g02215 488 MobiDBLite consensus disorder prediction 106 129 - -
Viun1g02215 488 MobiDBLite consensus disorder prediction 12 36 - -
Viun1g02215 488 MobiDBLite consensus disorder prediction 444 482 - -
Viun1g02215 488 SMART finulus 287 336 IPR011598 GO:0046983
Viun1g02215 488 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 347 IPR036638 GO:0046983
Viun1g02215 488 Pfam Helix-loop-helix DNA-binding domain 285 331 IPR011598 GO:0046983
Viun1g02215 488 MobiDBLite consensus disorder prediction 404 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02215 Viun-Chr1 33237203 33241029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02215 1 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 35.924 7.85e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g02215 HLH 5.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02215 - - gmx:100797225 663.299