Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02208 ATGCTCTGTGCTGCACCTCCTGAGGATGTTAAAAAGTACAAATTAGGAGATCCAAGAATGTTTCATTATCTGAATCAATCAAATTGCTTTGAGTTAGAGGGGCTTGATGAATCTAAGGAATATAGGGATACAAGGAGAGCAATGGATATTGTTGGAATAAGTTCCGAGGAGCAGGATGCAATTTTTAAAGTTGTCGCAGCAATTTTACATCTTGGGAACATTGAATTTAAGAAAGGGAAGGAGATAGACTCATCTGAGCCCAGAGATGAAAAATCTTGGTTCCATCTGAAGACTGCTGCTGAGCTTTTCATGTGTGATGTAAAGGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTCGAGATGAAACAATTACGAAATGGCTGGATCCAGAAGCTGCTGCACTCAGTCGAGATGCCTTGGCTAAGATTGTGTACTCACGATTGTTTGACTGGTTGGTTGATAAAATTAATAATTCTATCGGGCAGGATCCTGAGTCAAAATCCTTAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAGGAGGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTGCCCAAAAGCTGTATCAGACCTTCAAAAACCATAAAAGGTTTAGCAAGCCTAAATTATCACGTAGTGACTTTACAATTTGCCATTATGCTGGAGATGTCACTTATCAAACTGAATTTTTCCTCGACAAGAACAAAGATTATGTCGTTGCAGAGCACCAAGCACTTCTCTGTGCTTCAAAATGCCCCTTTGTATCGGGTTTGTTTCCTCCTTCACCTGAGGAATCTTCAAAACAATCAAAGTTCTCCTCCATTGGCTCACGATTTAAGCAACAATTGCAATCTTTACTTGAAACTCTCAGTTCCACTGAGCCACACTACATTCGTTGTGTAAAACCCAATAATCTTCTCAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCTGCAACTACGTTGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCCGGGTATCCTACAAGAAAAACCTTTGATGAATTTGTGGATCGATTTAGTCTTCTTGCACCTGAAGCATTGGATGGAAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTCTAAAGAATATTGGACTTGAAGGTTGTCAGATTGGTAAGACAAAGGTGTTTCTTCGAGCTGGTCAGATGGCAGAACTAGATACCCGTAGAAGTGAAATCTTAGGAAGGTCAGCAAGCATTATTCAGAGAAAAGTTCGTTCATATTTGTCACGCCGAAGTTTCATATTGCTTCGTCTGTCGGCTTTGAGGATTCAAGCTGCATGCAGAGGACAACTTGCTCGGCAAGTGTATGAGGGAATGCGGCAGGAGGCTTCTAGTTTGGTGATTCAGAGGTGCTTCCGCATGCATATTGCTAGGAAGGCATACAATGATTTGCATGCTACTGCTGTCACTATCCAGACGGGTATGCGGGGAATGGCTGCTCGTTGTGAGCTATACTTTAGAAGGAGGACTAAAGCAGCAATTGTCATTCAGAGCCACTGCCAGAAATACTTGGCACAACTTCATTTCACCGAACTAAAGAAAGCAGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTAGGCAAGAGTTGCGAAAGCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTCCAAGCTGCCAAAAGTAAGCTTGAAAAGCAAGTTGAAGACCTTACGTTAAGGTTGCAGCTGGAAAAACGTTTGAGGGTTGACATGGAAGAAGCAAAAGCTCAAGAAAACCAAAGATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGTTACTTCTTGAAAAGGAGAAAGAGGCTACAAAAGTAGCAGCAGAGAGAGCTCCCGTTATACAGGAGATTCCAGTTATTGACCATGCTTTGTTGGAGAAGCTCAGTGGTGAGAATGAGAAACTCAAGAACATGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAAGTACGAAGAGGCTAGCAAAATTGGCGAAGAAAGGTTAAAGCAAGCTTTGGATGCGGAATCAAAAGTAATTCAGTTGAAGACTGCTATGCAAAGGCTTGAAGAGAAATTCATAGACATGGAATCTGCAAACCATATTCTTCAGAAGCAATCACTACTAAACTCATCTGTGAAAACAATAGCAGAACACCTGTCTTCCCCAGTGGACGTGAAATTAGAAAATGGTCACCATGTGGCAGAAGAGGAGAAAGTTGTTGATACATATGTCACGCCTGTGAAACAATTTGGTACAGAATCTGACTTCAAACTAAGGAGATCTTACATTGAACGACAACATGAGAGTGTTGATTCGCTTGTTAACTGTGTTATGAAAAATATTGGCTTCAGTCATGGAAAACCCATTGCTGCATTCACCATTTACAAATGTCTTCTCCACTGGAAATCTTTTGAAGCTGAAAGAACCAGTGTATTTGATCGCCTGATTCAAATGATTGGTTCTGAAATTGAGAATCAAGATGGAAATGATCATATGGCCTATTGGCTGTCGAATACATCTGCGTTATTGTTTTTACTTGAACAAAGTCTTAAATCTGGGAGTTCAACAAATGCTACCCCAGTTAGAAAACCACCTAATCCAACATCTCTCTTTGGAAGAATGACTATGAGTTTTCTTTCATCCCCTTCTTCTGCCAACCTTGCTGCCCCTCCATCCGATGTTGTGCGCAAGGTAGAAGCTAAGTATCCTGCCTTGCTTTTTAAGCAACAGTTGACAGCCTATTTGGAGAAAATATATGGCATCATTCGGGATAATTTGAAGAAGGATTTAACTGCGGTCCTTGCATTATGCATCCAGGCACCAAGAACATCAAAGGGAGGGTTACGTTCTAGCCGATCCTCAGCTAAAGATTCCCCAATGGTTCACTGGCAGAGTACTATTGAATCCCTAAATACCCTCCTCTGTACATTGAAAGAGAACTTTGTGCCACCAGTTCTTATTCAAAAGATCTTCAGTCAGACATTCTCATATATTAATGTGCAACTTTTCAATAGTCTTCTTCTTCGACGTGATTGTTGCACATTCAGCAACGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGCTGTGGTGCTGCCAAGCAAAGGAAGAGTATGCAGGGTCATCATGGGATGAACTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTACAGGATTTCCTACGATGAAATCATCAACGATTTATGTCCTATCTTGAGTGTCCAACAGCTATACAGAATATGTACACTTTACTGGGATGGTAACTACAATACTCGAAGTGTATCTCCAGATGTGCTTTCAAGCATGAGGATGTTAATGGCTGAAGACTCCAACAACGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCTAGCATCCCCTTCTCAGTTGATGATCTTTCTACATCACTGCAAGAGAAGGACTTCTCAGACATGAAACCAGCGGATGAGCTTCTTGAAAATCCAGCCTTCCAATTTTTGAATGAGTAG 3762 0.4043 MLCAAPPEDVKKYKLGDPRMFHYLNQSNCFELEGLDESKEYRDTRRAMDIVGISSEEQDAIFKVVAAILHLGNIEFKKGKEIDSSEPRDEKSWFHLKTAAELFMCDVKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYSRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTEFFLDKNKDYVVAEHQALLCASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQSLLETLSSTEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAPEALDGSSDEVTACKRILKNIGLEGCQIGKTKVFLRAGQMAELDTRRSEILGRSASIIQRKVRSYLSRRSFILLRLSALRIQAACRGQLARQVYEGMRQEASSLVIQRCFRMHIARKAYNDLHATAVTIQTGMRGMAARCELYFRRRTKAAIVIQSHCQKYLAQLHFTELKKAAITTQCAWRGKVARQELRKLKMAARETGALQAAKSKLEKQVEDLTLRLQLEKRLRVDMEEAKAQENQRLQSALQEMQLQFKETKLLLEKEKEATKVAAERAPVIQEIPVIDHALLEKLSGENEKLKNMVSSLEKKIDETEKKYEEASKIGEERLKQALDAESKVIQLKTAMQRLEEKFIDMESANHILQKQSLLNSSVKTIAEHLSSPVDVKLENGHHVAEEEKVVDTYVTPVKQFGTESDFKLRRSYIERQHESVDSLVNCVMKNIGFSHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSEIENQDGNDHMAYWLSNTSALLFLLEQSLKSGSSTNATPVRKPPNPTSLFGRMTMSFLSSPSSANLAAPPSDVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKDLTAVLALCIQAPRTSKGGLRSSRSSAKDSPMVHWQSTIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDGNYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLNE 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02208 1253 Pfam Myosin head (motor domain) 2 462 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun1g02208 1253 FunFam unconventional myosin-Va 575 623 - -
Viun1g02208 1253 SMART MYSc_2a 4 475 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun1g02208 1253 Coils Coil 756 790 - -
Viun1g02208 1253 Gene3D - 181 365 - -
Viun1g02208 1253 CDD MyosinXI_CBD 849 1222 IPR037975 GO:0007015
Viun1g02208 1253 ProSiteProfiles IQ motif profile. 525 554 IPR000048 GO:0005515
Viun1g02208 1253 SMART iq_5 595 617 IPR000048 GO:0005515
Viun1g02208 1253 SMART iq_5 547 569 IPR000048 GO:0005515
Viun1g02208 1253 SMART iq_5 524 546 IPR000048 GO:0005515
Viun1g02208 1253 SMART iq_5 476 498 IPR000048 GO:0005515
Viun1g02208 1253 SMART iq_5 499 521 IPR000048 GO:0005515
Viun1g02208 1253 SMART iq_5 572 594 IPR000048 GO:0005515
Viun1g02208 1253 ProSiteProfiles IQ motif profile. 500 529 IPR000048 GO:0005515
Viun1g02208 1253 FunFam Myosin 2 54 172 - -
Viun1g02208 1253 Coils Coil 633 692 - -
Viun1g02208 1253 Gene3D - 408 475 - -
Viun1g02208 1253 Gene3D - 1 52 - -
Viun1g02208 1253 SMART DIL_2 1074 1181 IPR002710 -
Viun1g02208 1253 Gene3D Kinesin motor domain 165 404 IPR036961 -
Viun1g02208 1253 Pfam IQ calmodulin-binding motif 479 497 IPR000048 GO:0005515
Viun1g02208 1253 Pfam IQ calmodulin-binding motif 528 545 IPR000048 GO:0005515
Viun1g02208 1253 Pfam IQ calmodulin-binding motif 598 617 IPR000048 GO:0005515
Viun1g02208 1253 Pfam IQ calmodulin-binding motif 503 520 IPR000048 GO:0005515
Viun1g02208 1253 Pfam IQ calmodulin-binding motif 574 593 IPR000048 GO:0005515
Viun1g02208 1253 ProSiteProfiles IQ motif profile. 548 577 IPR000048 GO:0005515
Viun1g02208 1253 Gene3D Myosin VI head, motor domain, U50 subdomain 54 343 - -
Viun1g02208 1253 ProSiteProfiles Myosin motor domain profile. 1 474 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun1g02208 1253 FunFam Myosin XI D 477 526 - -
Viun1g02208 1253 ProSiteProfiles IQ motif profile. 596 625 IPR000048 GO:0005515
Viun1g02208 1253 Pfam DIL domain 1075 1177 IPR002710 -
Viun1g02208 1253 Gene3D - 477 526 - -
Viun1g02208 1253 Gene3D - 527 574 - -
Viun1g02208 1253 Gene3D - 575 624 - -
Viun1g02208 1253 PRINTS Myosin heavy chain signature 224 252 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun1g02208 1253 PRINTS Myosin heavy chain signature 171 199 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun1g02208 1253 Coils Coil 714 748 - -
Viun1g02208 1253 ProSiteProfiles Dilute domain profile. 898 1199 IPR002710 -
Viun1g02208 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 527 IPR027417 -
Viun1g02208 1253 FunFam Class V myosin 181 320 - -
Viun1g02208 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 528 625 IPR027417 -
Viun1g02208 1253 PANTHER MYOSIN 1 1187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02208 Viun-Chr1 33104690 33117982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02208 1 1252 Myosins gene family AT5G43900 72.951 0.0 1875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02208 K10357 - gmx:100795648 2274.2