Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02203 ATGACCGGACGCCCTGCCGGAATCTCGACGTTTGCCTCTCGCTCTTTCAGTTTCCTCTCTCCTCCTGACGATGCTCAACGCCGGTGTCGACTGCGGCTAGAGAGAATGCCGGTGTCGGTCGTCTTCTTCCTTGCTTTTCTCAACTTGCTTTCCTCTTCTCAAGTGAAGTCGTTTTCTTTGAGTGTGTCATTTGCTTCATCAGAACAAGCTAAAATGTGGTTTGCTAAACCTTCTTTTGGACCTTCTTCTGCACCCATTCCATCTCCAAACCATCAAGGTCCTTACATGACTTCAAGACAGAGACATCATTATCATCACCGTCGCCATCACAGCATGAGACCTTATGTAGTGGCTCCACCCCCTTCAGAAGACAAAGCTTGCGACCAAATCTGCACTGAACCACTTACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTAATTCCCATGAAGGTTCGACTTACACTGGATGTAGCACCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGAATGAAATTGCATTAGGCACGTATCTAGAGCAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACAGTCAAAATCAGGGAAGAACTGTTGTTGATATTAATTTGGTTCCGCTGGGAGAGAAATTTGACAATACAACCGCAGCTTTGACATATGAGAGGTTTTGGCACAAGAAGGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCCGTTGTGTATATTACTTATCCAGGAATGCCATCTTCACCCCCATATGGATCTTTAGTTGGGAGTGGTCCCAGTCAAAGTGTTGAGGGCATTCTTCCGGTCAGTGCCAACTTTGTCGGCAAGAACCAGAAAATGAATGTGAGAACCATAATCATCATTGCTTTATCTTCATTTGTACTCTTGCTGGTTTTGGTGGGAGCATTTTCAATTATTTTGAAATGGAAGAAGACTAGGAGACCATCGAATGCTGTTGGCCCTGCATTCACATCATCTCTGAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGCAGTATTACTAGCTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAATTCAAAGCGGATACTGGGCGAAGGAGGATTTGGACGTGTTTATAGTGGAACATTGGAAGATGGCGCTGAAGTTGCAGTTAAGCTTCTAACAAGAGATAATCAGAATGGAGACCGTGAATTTATTGCAGAGGTTGAGATGCTAAGCCGTTTACATCACCGGAATCTAGTGAAACTGATTGGTATATGCATTGAGGGGCGCAGGCGTTGCTTGGTGTATGAACTTGTTCGCAATGGAAGTGTTGAGTCCCATCTGCATGGTGATGACAAGATAAAGGGGATGCTAGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCAAGAGGATTGGCATATCTTCACGAGGATTCCAATCCCCGTGTAATCCATCGAGACTTTAAAGCTAGTAACGTGTTACTAGAAGATGACTTCACTCCCAAAGTTTCTGATTTTGGATTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGAGTGATGGGAACTTTTGGGTATGTTGCTCCCGAATATGCAATGACAGGGCATTTACTGGTCAAGAGTGATGTTTATAGTTACGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCAATGTTGACCAGTAGAGAAGGACTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCCGCAATCGCTTCAATGTGTGTTCACACGGAGGTTACACAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTAATATACAATGACACAGATGAGACTTGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCTCAGGAGTCCGATTTTAGAGGTGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGGTTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATTACTATGGAGTACAGTTCTGGTCCACTTGAAGAAATGGAAAACAGACCGTTTTCAACATCAAGCTTGATTGGAGATGAGATATCGTTACCAATTAGGCATGGGAATAGATCAGGCCCCTTAAGAACAGTCCGAAACAAACTTTCCTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCCAAGCGTAATTGGAATGATGGTTACTGGGTTTAA 2352 0.4426 MTGRPAGISTFASRSFSFLSPPDDAQRRCRLRLERMPVSVVFFLAFLNLLSSSQVKSFSLSVSFASSEQAKMWFAKPSFGPSSAPIPSPNHQGPYMTSRQRHHYHHRRHHSMRPYVVAPPPSEDKACDQICTEPLTSTPFGSPCGCVIPMKVRLTLDVAPYAVFPVMTELENEIALGTYLEQSQVKIMGATADSQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPYGSLVGSGPSQSVEGILPVSANFVGKNQKMNVRTIIIIALSSFVLLLVLVGAFSIILKWKKTRRPSNAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFNSKRILGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHTEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTVRNKLSLHRFTGSRSEHGGPSSKRNWNDGYWV 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02203 783 SUPERFAMILY Protein kinase-like (PK-like) 358 655 IPR011009 -
Viun1g02203 783 Pfam Protein tyrosine and serine/threonine kinase 382 652 IPR001245 GO:0004672|GO:0006468
Viun1g02203 783 Gene3D Transferase(Phosphotransferase) domain 1 456 677 - -
Viun1g02203 783 PANTHER OS01G0750732 PROTEIN 119 674 - -
Viun1g02203 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Viun1g02203 783 Gene3D Phosphorylase Kinase; domain 1 351 455 - -
Viun1g02203 783 ProSiteProfiles Protein kinase domain profile. 380 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02203 783 FunFam receptor-like serine/threonine-protein kinase ALE2 353 455 - -
Viun1g02203 783 CDD STKc_IRAK 386 655 - -
Viun1g02203 783 MobiDBLite consensus disorder prediction 762 783 - -
Viun1g02203 783 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Viun1g02203 783 FunFam Receptor-like serine/threonine-protein kinase ALE2 456 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02203 Viun-Chr1 33071818 33078795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02203 130 772 Receptor kinase-like Gene Family AT5G56890 54.573 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Viun1g02203 PK_Tyr_Ser-Thr 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02203 - - gmx:100792309 1374.76