Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02202 ATGACCGGACGCCCTGCCGGAATCTCGACGTTTGCCTCTCGCTCTTTCAGTTTCCTCTCTCCTCCTGACGATGCTCAACGCCGGTGTCGACTGCGGCTAGAGAGAATGCCGGTGTCGGTCGTCTTCTTCCTTGCTTTTCTCAACTTGCTTTCCTCTTCTCAAGTGAAGTCGTTTTCTTTGAGTGTGTCATTTGCTTCATCAGAACAAGCTAAAATGTGGTTTGCTAAACCTTCTTTTGGACCTTCTTCTGCACCCATTCCATCTCCAAACCATCAAGGTCCTTACATGACTTCAAGACAGAGACATCATTATCATCACCGTCGCCATCACAGCATGAGACCTTATGTAGTGGCTCCACCCCCTTCAGAAGACAAAGCTTGCGACCAAATCTGCACTGAACCACTTACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTAATTCCCATGAAGGTTCGACTTACACTGGATGTAGCACCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGAATGAAATTGCATTAGGCACGTATCTAGAGCAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACAGTCAAAATCAGGGAAGAACTGTTGTTGATATTAATTTGGTTCCGCTGGGAGAGAAATTTGACAATACAACCGCAGCTTTGACATATGAGAGGTTTTGGCACAAGAAGGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCCGTTGTGTATATTACTTATCCAGTTGGGAGTGGTCCCAGTCAAAGTGTTGAGGGCATTCTTCCGGTCAGTGCCAACTTTGTCGGCAAGAACCAGAAAATGAATGTGAGAACCATAATCATCATTGCTTTATCTTCATTTGTACTCTTGCTGGTTTTGGTGGGAGCATTTTCAATTATTTTGAAATGGAAGAAGACTAGGAGACCATCGAATGCTGTTGGCCCTGCATTCACATCATCTCTGAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGCAGTATTACTAGCTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAATTCAAAGCGGATACTGGGCGAAGGAGGATTTGGACGTGTTTATAGTGGAACATTGGAAGATGGCGCTGAAGTTGCAGTTAAGCTTCTAACAAGAGATAATCAGAATGGAGACCGTGAATTTATTGCAGAGGTTGAGATGCTAAGCCGTTTACATCACCGGAATCTAGTGAAACTGATTGGTATATGCATTGAGGGGCGCAGGCGTTGCTTGGTGTATGAACTTGTTCGCAATGGAAGTGTTGAGTCCCATCTGCATGGTGATGACAAGATAAAGGGGATGCTAGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCAAGAGGATTGGCATATCTTCACGAGGATTCCAATCCCCGTGTAATCCATCGAGACTTTAAAGCTAGTAACGTGTTACTAGAAGATGACTTCACTCCCAAAGTTTCTGATTTTGGATTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGAGTGATGGGAACTTTTGGGTATGTTGCTCCCGAATATGCAATGACAGGGCATTTACTGGTCAAGAGTGATGTTTATAGTTACGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCAATGTTGACCAGTAGAGAAGGACTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCCGCAATCGCTTCAATGTGTGTTCACACGGAGGTTACACAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTAATATACAATGACACAGATGAGACTTGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCTCAGGAGTCCGATTTTAGAGGTGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGGTTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATTACTATGGAGTACAGTTCTGGTCCACTTGAAGAAATGGAAAACAGACCGTTTTCAACATCAAGCTTGATTGGAGATGAGATATCGTTACCAATTAGGCATGGGAATAGATCAGGCCCCTTAAGAACAGTCCGAAACAAACTTTCCTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCCAAGCGTAATTGGAATGATGGTTACTGGGTTTAA 2319 0.4424 MTGRPAGISTFASRSFSFLSPPDDAQRRCRLRLERMPVSVVFFLAFLNLLSSSQVKSFSLSVSFASSEQAKMWFAKPSFGPSSAPIPSPNHQGPYMTSRQRHHYHHRRHHSMRPYVVAPPPSEDKACDQICTEPLTSTPFGSPCGCVIPMKVRLTLDVAPYAVFPVMTELENEIALGTYLEQSQVKIMGATADSQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPVGSGPSQSVEGILPVSANFVGKNQKMNVRTIIIIALSSFVLLLVLVGAFSIILKWKKTRRPSNAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFNSKRILGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHTEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTVRNKLSLHRFTGSRSEHGGPSSKRNWNDGYWV 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02202 772 PANTHER OS01G0750732 PROTEIN 119 663 - -
Viun1g02202 772 FunFam receptor-like serine/threonine-protein kinase ALE2 342 444 - -
Viun1g02202 772 CDD STKc_IRAK 375 644 - -
Viun1g02202 772 ProSiteProfiles Protein kinase domain profile. 369 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02202 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Viun1g02202 772 MobiDBLite consensus disorder prediction 751 772 - -
Viun1g02202 772 SUPERFAMILY Protein kinase-like (PK-like) 347 644 IPR011009 -
Viun1g02202 772 Gene3D Transferase(Phosphotransferase) domain 1 445 666 - -
Viun1g02202 772 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Viun1g02202 772 FunFam Receptor-like serine/threonine-protein kinase ALE2 445 662 - -
Viun1g02202 772 Gene3D Phosphorylase Kinase; domain 1 340 444 - -
Viun1g02202 772 Pfam Protein tyrosine and serine/threonine kinase 371 641 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02202 Viun-Chr1 33071816 33078795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02202 130 761 Receptor kinase-like Gene Family AT5G56890 54.123 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Viun1g02202 PK_Tyr_Ser-Thr 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02202 - - gmx:100792309 1351.27