Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02188 ATGGAAGATGAACGCAAAGACAAAAACGAACACGCAACAAAATCTGACAACTCACGGACCCAATTAAAAGTCCTTATTGTGGATGATGTTAAGGTTGTTCGAATGACTCACAAAATGCTGTTGGAGAGAGTTGGGATAAAAGATCACATTGCTGTTGAAAATGGCAAAGAAGCAGTTGAACTTCACAACAATGGTCAAAGTTTTGACCTGATTCTCATGGATAAGGACATGCCTGTCATGAATGGAATTGAGGCAACAAGGACACTTCGTTCTATGGGCATTAGTTGCAAGATCATTGGTGTGTCGTCATCAACCTGCAATCAGAAATATGTACAAGAATTCGTCGAAGCAGGGCTAAATGGCTTCTACACGAAACCCTTGACTGTTAAAATGCTTGGTGAAATTCTTGAAAAGGTTAAGTCATGA 426 0.3991 MEDERKDKNEHATKSDNSRTQLKVLIVDDVKVVRMTHKMLLERVGIKDHIAVENGKEAVELHNNGQSFDLILMDKDMPVMNGIEATRTLRSMGISCKIIGVSSSTCNQKYVQEFVEAGLNGFYTKPLTVKMLGEILEKVKS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02188 141 CDD REC_hyHK_CKI1_RcsC-like 24 136 - -
Viun1g02188 141 SMART REC_2 22 136 IPR001789 GO:0000160
Viun1g02188 141 Pfam Response regulator receiver domain 24 135 IPR001789 GO:0000160
Viun1g02188 141 Gene3D - 1 141 - -
Viun1g02188 141 ProSiteProfiles Response regulatory domain profile. 23 140 IPR001789 GO:0000160
Viun1g02188 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 140 - -
Viun1g02188 141 SUPERFAMILY CheY-like 21 139 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02188 Viun-Chr1 32991958 32992632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02188 22 128 Response Regulator Gene Family AT3G04280 45.370 3.28e-24 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun1g02188 Response_reg 6.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02188 - - var:108322984 154.451