Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02179 ATGACTACTAGGCAGTGGTATCTGGGGGTGGACATCATGGGTATGCATGTTAGGTCGGCTCTAACTGCAATGGTATATCGAAAGGGTTTAAGGATATCAAGCTTGGCCAAGCAAAGTCACACAAGTGGGGAAATTGTTAACTACATGGCTATTGATGTCCAGAGGGTTGGGGACTACTCTTGGTATCTCCATGACATGTGGATGCTTCCTCTCCAGATTGTTCTTGCCCTGGCAATTTTGTATAAGAATGTTGGAATTGCCTCTATTGCGACGCTGATTGCTACAATAATTTCCATTGTCGTCACTGTTCCTGTGGCCAGGATCCAAGAAGATTATCAAGACAGATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCCGAGTGCCTGAGGAATATGAGGATTCTCAAACTTCAAGCTTGGGAAGACAGATATAGAGTCAAACTGGAGGATATGCGTGGAGTAGAATTCAAGTGGCTTCGGAAAGCCCTCTATTCTCAGGCTTTCATAACTTTTATATTCTGGAGCTCTCCGATTTTTGTTTCAGCAGTTACTTTTGCTACTTCCATATTGTTGGGTGGTCAGCTGACAGCTGGAGGTGTACTTTCTGCTCTGGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTTCCAGACTTGGTGTCAACAATGGCTCAAACAAAAGTTTCTCTTGATCGGTTATCTGGCTTCCTTCTGGAGGAAGAATTGCAGGAAGATGCAACTATTGCCTTGCCACAAGGCATCACTAACATTGCTATAGAAATTAAGGATGGTGTCTTCTGTTGGGACCTTTCATCTTCTAGACCTACTCTATCAGGGATAAGTATGAAAGTTGAAAAAGGGATGCGTGTGGCTGTTTGTGGCATGGTTGGTGCTGGGAAATCAAGCTTTCTGTCTTGCATCCTTGGAGAAATTCCTAAGACTTCTGGGGAAGTCAGAGTGTGTGGATCTTCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCAAGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACACGGTGATCAGACAATTATCGGTGATAGAGGTATAAATCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTCTACCAGGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGACGCTCACACTGGATCTGACTTGTTCAGGGATTATATATTGACAGCACTAGCAGATAAAACAGTCATTTATGTGACCCATCAAGTTGAATTTCTTCCCGCTGCTGATTTGATACTGGTGCTTAAAGAAGGCAGCATCATACAGGCAGGAAAGTATGACGAACTTTTACAAGCAGGAACAGATTTTAATACTCTGGTTTCAGCCCATCATGAAGCCATAGAGGCTATGGATATCCCTGCTCACTCCTCTGAAGATTCAGATGAAAATTTATCTCTGGAGGCATCTGTTATGACCAGTAAGAAATCCATATGTTCTGCAAATGATATAGACAATTTGGCCAAGGAAGTACAAGAAGGAGCGTCTACTTCAGATCAAAAAGCAATTAAGGAGAAGAAGAAAGCAAAGAGATCGAGAAAGAAACAGCTTGTTCAGGAAGAAGAGAGGATTAGAGGTAGAGTCAGCATGAAGGTCTACTTGTCATACATGGCAGCCGCATATAAAGGCTTGTTAATTCCTCTCATAATCATTGCACAAGCATTGTTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCTTGGGCTAACCCTCAAACAGAAGGAGACCTGCCCAAAGTAACTCCCTCAGTTCTTCTTCTTGTATACATGGCCCTTGCTTTTGGCAGCTCATGGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACATTTGGCCTTGCAGCTGCACAGAAGCTATTTTTGAAAATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAATAGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGCGGGTTTGCTTCAACAACAATACAACTTATTGGTATTGTTGGGGTAATGACAGAAGTTACATGGCAAGTTTTACTGTTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCATCCTCCAGGGAATTGGTTCGTATTGTTAGCATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAGTCAATTGCTGGAGCATCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGTTTTGCACGACCATTCTTCTGTAGTCTTTCTGCAATTGAGTGGCTTTGCCTGCGGATGGAGTTATTGTCAACCTTTGTATTTGCTTTCTGCATGGTATTGCTTGTGAGTTTTCCTCGAGGAAGTATAGACCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTAAATTTAAATGCACGCTTATCACGGTGGATACTCAGCTTTTGCAAACTTGAAAATAAAATTATATCCATTGAGAGAATATATCAGTACAGCCAAATTCCTAGCGAAGCACCCACTATAATTGAAGATTCTCGCCCTCCATCCTCATGGCCTGAAAATGGGACAATCGAAATAATTGATTTGAAGGTCCGTTACAAGGAGAACCTTCCTTTGGTGCTTCATGGAGTAACATGCACATTTCCTGGTGGAAAGAAGATCGGAATAGTTGGACGAACTGGCAGTGGAAAATCTACTTTAATTCAGGCACTATTTCGATTGATTGAACCAACAAGTGGAAGTATCCTTATTGACAACATCAATATTTCAGATATTGGCCTTCATGATCTTCGAGGCCATCTCAGTATCATCCCACAAGATCCAACTTTATTCGAAGGTACTATCAGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGAGATTTGGGAGGCACTTGACAAGTCTCAGCTTGGAGAGGTTATCCGTGACAAAGGACAACAGCTCGATACACCAGTTCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGACAACTTGTTGCTCTGGGCCGAGCACTGCTGCAGCAGTCAAGAATACTTGTACTGGATGAAGCAACGGCATCAGTTGATACCACCACAGATAATCTAATTCAGAAGATTATCCGAAGTGAGTTCAAGGCCTGCACTGTGTGCACTATTGCACATCGTATACCTACTGTCATCGACAGTGATCAAGTTCTTGTGCTAAGTGATGGTCGAGTTGCAGAGTTTGACACTCCTACAAGACTATTAGAGGACAAGTCTTCCATGTTTCTGAAGTTGGTGACTGAGTATTCATCACGTTCGAGTGGAATACCAGAATTTTAG 3462 0.4249 MTTRQWYLGVDIMGMHVRSALTAMVYRKGLRISSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIVVTVPVARIQEDYQDRLMAAKDERMRKTSECLRNMRILKLQAWEDRYRVKLEDMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIALPQGITNIAIEIKDGVFCWDLSSSRPTLSGISMKVEKGMRVAVCGMVGAGKSSFLSCILGEIPKTSGEVRVCGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKNVLQACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFRDYILTALADKTVIYVTHQVEFLPAADLILVLKEGSIIQAGKYDELLQAGTDFNTLVSAHHEAIEAMDIPAHSSEDSDENLSLEASVMTSKKSICSANDIDNLAKEVQEGASTSDQKAIKEKKKAKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTIIEDSRPPSSWPENGTIEIIDLKVRYKENLPLVLHGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTSGSILIDNINISDIGLHDLRGHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEVIRDKGQQLDTPVLENGDNWSVGQRQLVALGRALLQQSRILVLDEATASVDTTTDNLIQKIIRSEFKACTVCTIAHRIPTVIDSDQVLVLSDGRVAEFDTPTRLLEDKSSMFLKLVTEYSSRSSGIPEF 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02179 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 1137 IPR027417 -
Viun1g02179 1153 ProSitePatterns ABC transporters family signature. 387 401 IPR017871 GO:0005524|GO:0016887
Viun1g02179 1153 Gene3D ABC transporter type 1, transmembrane domain 2 245 IPR036640 GO:0005524|GO:0016020
Viun1g02179 1153 Gene3D ABC transporter type 1, transmembrane domain 549 888 IPR036640 GO:0005524|GO:0016020
Viun1g02179 1153 Coils Coil 545 565 - -
Viun1g02179 1153 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1144 - -
Viun1g02179 1153 FunFam ABC transporter C family member 3 890 1142 - -
Viun1g02179 1153 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 590 860 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02179 1153 SMART AAA_5 933 1118 IPR003593 GO:0016887
Viun1g02179 1153 SMART AAA_5 289 470 IPR003593 GO:0016887
Viun1g02179 1153 SUPERFAMILY ABC transporter transmembrane region 10 242 IPR036640 GO:0005524|GO:0016020
Viun1g02179 1153 CDD ABC_6TM_ABCC_D1 1 236 IPR044746 GO:0140359
Viun1g02179 1153 CDD ABCC_MRP_domain2 905 1125 - -
Viun1g02179 1153 Gene3D - 890 1143 IPR027417 -
Viun1g02179 1153 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 228 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02179 1153 FunFam ABC transporter C family member 10 1 244 - -
Viun1g02179 1153 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 907 1141 IPR003439 GO:0005524
Viun1g02179 1153 Pfam ABC transporter 280 414 IPR003439 GO:0005524
Viun1g02179 1153 Pfam ABC transporter 924 1072 IPR003439 GO:0005524
Viun1g02179 1153 Pfam ABC transporter transmembrane region 7 216 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02179 1153 Pfam ABC transporter transmembrane region 590 832 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02179 1153 SUPERFAMILY ABC transporter transmembrane region 587 887 IPR036640 GO:0005524|GO:0016020
Viun1g02179 1153 CDD ABC_6TM_ABCC_D2 588 882 IPR044726 GO:0140359
Viun1g02179 1153 FunFam ABC transporter C family member 5 247 494 - -
Viun1g02179 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 484 IPR027417 -
Viun1g02179 1153 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 262 485 IPR003439 GO:0005524
Viun1g02179 1153 Gene3D - 260 492 IPR027417 -
Viun1g02179 1153 CDD ABCC_MRP_domain1 262 462 - -
Viun1g02179 1153 FunFam ABC transporter C family member 5 551 888 - -
Viun1g02179 1153 MobiDBLite consensus disorder prediction 537 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02179 Viun-Chr1 32903812 32910995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02179 262 478 Calmodulin-binding Proteins AT2G36910 31.356 3.04e-21 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02179 - - gmx:100790550 2129.37