Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02156 ATGGCGCCGAATCCAAGAGTCATAGCGGCGTTTTCGGCAATGGCGAATCTCGGGATTCATGAATCAAAAGTGAAACCAGTGTTGAAGAAGCTGCTTAAATTGTATGATAAAAACTGGGAGCTTATTGAAGAAGAGAGTTACAGGGCTCTGGCTGATGCAATATTTGAGGAAGAAGAAAATAAGTTGCTGGAGCCAGACCAGAATAACAAAAACAAGAAGGATGGAGAGGTGGACAATGAAGAAGCTCATATGCATGAGGAGCCTATGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTCACGCCCTCTAACTAATCGTGGCCATAGCTCAGCTGCCTTTCCGTTGAAAACTCCAAAATTGGAAGAAGGCACAGTGCCTGAAATTAGTTCCAGACTGCAGCCTCAATGCAGTGCTGCATTATCTGATGGAAATGCAAGGAATGATGCTCCTCATGTTCCCCCACAAGATGCTATTGTCAACAGGGGAAAGCAACCTGTATCACCTCAGGTTACACCTAGAGGGGGAAGGTCTATGTCCGACCATACTTCCCTTGCAGAACCACTAAAAGAGTCAGTAGCTGAACCACGAGCTGCTCCGTTGGCCAATAACAAAATGCTTGTTCCATTTACTTTGATCAAGCCGAAGGATGAGCCTGTTGATGATTTGCCAGATTGTGAGATTCCCCTTGCTATGATTCCTCCTGAACCATCAAGTGGAGGAGACTCTCTAATGGATGCAGCTGAAAAGCAAGATGACCACGATACTCTGGGATCACAATGCAGAGATGAAGACGTTGGGCATGAATATTCTTCCTCAATCGAAGAGCGAACTTCTTATGTAGACGTAGCATTGCCATCTATTGGAGAGGAACAATGTGTAAAGATAAAACAAACTGATGATGTTTCAAAGGAATCTGAGACCAATGTCTCACCTAGCGTGAGAAGAAATAAAGATCCTGTCATTGAAAACGAAATCAGTGTTAGGTCTTTTTCAGCCTTGGCTGAACCTGAAGTCCCTAGTTCTTTACCCTGCCCAAGTGATCAAGATGAGGCTGTACTAGCTTCCAAGAAGGTTAGGACGAATGGTTTCTTACAACGTAATGGTGGGAAGGATCCAGAGGATCCTATATCTACAAATTCAGGTCCCTTAGTGGTTATTCCAAAATGTGAATTTACGACTGAAAATGATGCAAGGGCTGTTCACAATGTTAATGACCTGGCAAAGGGTGAAGAAAGAGTAAATATTTCATGGGTGAATAACACTACTAATGATCTTCCACCACCCTTTCACTACATACCCCAAAACCTTGTGTACCGAGATGCTTATGTTAATTTTTCTCTATCTCGTATTGGAAATGAGGATTGTTGCTCAGCTTGTAAGGGCAATTGTGTATTGTCATCTAAACCATGTCCTTGTACAAATAAAACTGGGGGTGAATTTGCTTTTACGGCACATGGCCTACTAAAGGAAGCTTTCTTGGATGAGTGTATTGCCATCAACCGTGATTTCCAAAATTATTTCTATTGCAAAGCCTGTCCATTCGAACAATCAAAGAATGATGATTGTTTGGAACCATGTAAAGGACACCTAAAGCAGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGGAAAACATTGTGGAAATCGGGTTGTCCAGCGTGGAATAAGTTGCAAGTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGCACCTTTGTATGCGAGTTTGTTGGGGAAATTTTAACTCTCAATGAGTTGCACGAGAGGAACATGAAAAATCCAAAAGGTGGGAAATATACATTTCCAGTTTTATTGGATGCAGACTGGGATTTAGGAGTTGTGAAGGATAGGGAAGCTCTTTGCTTATATGCGGCATCATATGGAAATGTTGCTAGATTTATTAATCACAGATGTTTGGATGCAAACTTAATTCAGATCCCAGTTGAAGTCGAGTGCCCAACTCATCGATACTATCATTTTGCGTTCTTTGCAACCAGAAAAATAGCAGCACAGGAAGAACTCACTTGGGATTATGGCATCAACTTTGACGATCACGATGAGTCTGTTGAGCTTTTCCGGTGCAGATGTGGCAGTAAATTCTGCAGGAATATTAAGCGATCAAATAGTTAG 2184 0.424 MAPNPRVIAAFSAMANLGIHESKVKPVLKKLLKLYDKNWELIEEESYRALADAIFEEEENKLLEPDQNNKNKKDGEVDNEEAHMHEEPMRPLKRLRLRGQEGQSSRPLTNRGHSSAAFPLKTPKLEEGTVPEISSRLQPQCSAALSDGNARNDAPHVPPQDAIVNRGKQPVSPQVTPRGGRSMSDHTSLAEPLKESVAEPRAAPLANNKMLVPFTLIKPKDEPVDDLPDCEIPLAMIPPEPSSGGDSLMDAAEKQDDHDTLGSQCRDEDVGHEYSSSIEERTSYVDVALPSIGEEQCVKIKQTDDVSKESETNVSPSVRRNKDPVIENEISVRSFSALAEPEVPSSLPCPSDQDEAVLASKKVRTNGFLQRNGGKDPEDPISTNSGPLVVIPKCEFTTENDARAVHNVNDLAKGEERVNISWVNNTTNDLPPPFHYIPQNLVYRDAYVNFSLSRIGNEDCCSACKGNCVLSSKPCPCTNKTGGEFAFTAHGLLKEAFLDECIAINRDFQNYFYCKACPFEQSKNDDCLEPCKGHLKQKFIKECWSKCGCGKHCGNRVVQRGISCKLQVFLTSDGKGWGLRTLEDLPKGTFVCEFVGEILTLNELHERNMKNPKGGKYTFPVLLDADWDLGVVKDREALCLYAASYGNVARFINHRCLDANLIQIPVEVECPTHRYYHFAFFATRKIAAQEELTWDYGINFDDHDESVELFRCRCGSKFCRNIKRSNS 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02156 727 ProSiteProfiles SET domain profile. 564 697 IPR001214 GO:0005515
Viun1g02156 727 MobiDBLite consensus disorder prediction 61 124 - -
Viun1g02156 727 Gene3D - 1 60 IPR043017 -
Viun1g02156 727 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 726 - -
Viun1g02156 727 CDD SET_SETDB-like 432 697 - -
Viun1g02156 727 Gene3D SET domain 411 722 IPR046341 -
Viun1g02156 727 Pfam SET domain 576 697 IPR001214 GO:0005515
Viun1g02156 727 MobiDBLite consensus disorder prediction 102 116 - -
Viun1g02156 727 SUPERFAMILY SET domain 418 720 IPR046341 -
Viun1g02156 727 SMART set_7 564 703 IPR001214 GO:0005515
Viun1g02156 727 ProSiteProfiles Pre-SET domain profile. 460 561 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun1g02156 727 MobiDBLite consensus disorder prediction 145 201 - -
Viun1g02156 727 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Viun1g02156 727 MobiDBLite consensus disorder prediction 61 100 - -
Viun1g02156 727 Pfam Pre-SET motif 412 556 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun1g02156 727 MobiDBLite consensus disorder prediction 167 183 - -
Viun1g02156 727 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 725 IPR025776 -
Viun1g02156 727 SMART preset_2 408 548 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02156 Viun-Chr1 32788838 32795859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02156 410 720 Su(var)3-9 homologs AT1G73100 29.819 5.95e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun1g02156 Pre-SET 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02156 - - var:108323268 1318.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02156 1 32788838 32795859 Viun1g02156 1 32788838 32795859 ECH
Viun7g01261 7 14347693 14355082 Viun1g02156 1 32788838 32795859 PCT