Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02155 ATGGCGCCGAATCCAAGAGTCATAGCGGCGTTTTCGGCAATGGCGAATCTCGGGATTCATGAATCAAAAGTGAAACCAGTGTTGAAGAAGCTGCTTAAATTGTATGATAAAAACTGGGAGCTTATTGAAGAAGAGAGTTACAGGGCTCTGGCTGATGCAATATTTGAGGAAGAAGAAAATAAGTTGCTGGAGCCAGACCAGAATAACAAAAACAAGAAGGATGGAGAGGTGGACAATGAAGAAGCTCATATGCATGAGGAGCCTATGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTCACGCCCTCTAACTAATCGTGGCCATAGCTCAGCTGCCTTTCCGTTGAAAACTCCAAAATTGGAAGAAGGCACAGTGCCTGAAATTAGTTCCAGACTGCAGCCTCAATGCAGTGCTGCATTATCTGATGGAAATGCAAGGAATGATGCTCCTCATGTTCCCCCACAAGATGCTATTGTCAACAGGGGAAAGCAACCTGTATCACCTCAGGTTACACCTAGAGGGGGAAGGTCTATGTCCGACCATACTTCCCTTGCAGAACCACTAAAAGAGTCAGTAGCTGAACCACGAGCTGCTCCGTTGGCCAATAACAAAATGCTTGTTCCATTTACTTTGATCAAGCCGAAGGATGAGCCTGTTGATGATTTGCCAGATTGTGAGATTCCCCTTGCTATGATTCCTCCTGAACCATCAAGTGGAGGAGACTCTCTAATGGATGCAGCTGAAAAGCAAGATGACCACGATACTCTGGGATCACAATGCAGAGATGAAGACGTTGGGCATGAATATTCTTCCTCAATCGAAGAGCGAACTTCTTATGTAGACGTAGCATTGCCATCTATTGGAGAGGAACAATGTGTAAAGATAAAACAAACTGATGATGTTTCAAAGGAATCTGAGACCAATGTCTCACCTAGCGTGAGAAGAAATAAAGATCCTGTCATTGAAAACGAAATCAGTGTTAGGTCTTTTTCAGCCTTGGCTGAACCTGAAGTCCCTAGTTCTTTACCCTGCCCAAGTGATCAAGATGAGGCTGTACTAGCTTCCAAGAAGGTTAGGACGAATGGTTTCTTACAACGTAATGGTGGGAAGGATCCAGAGGATCCTATATCTACAAATTCAGGTCCCTTAGTGGTTATTCCAAAATGTGAATTTACGACTGAAAATGATGCAAGGGCTGTTCACAATGTTAATGACCTGGCAAAGGGTGAAGAAAGAGTAAATATTTCATGGGTGAATAACACTACTAATGATCTTCCACCACCCTTTCACTACATACCCCAAAACCTTGTGTACCGAGATGCTTATGTTAATTTTTCTCTATCTCGTATTGGAAATGAGGATTGTTGCTCAGCTTGTAAGGGCAATTGTGTATTGTCATCTAAACCATGTCCTTGTACAAATAAAACTGGGGGTGAATTTGCTTTTACGGCACATGGCCTACTAAAGGAAGCTTTCTTGGATGAGTGTATTGCCATCAACCGTGATTTCCAAAATTATTTCTATTGCAAAGCCTGTCCATTCGAACAATCAAAGAATGATGATTGTTTGGAACCATGTAAAGGACACCTAAAGCAGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGGAAAACATTGTGGAAATCGGGTTGTCCAGCGTGGAATAAGTTGCAAGTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGCACCTTTGTATGCGAGTTTGTTGGGGAAATTTTAACTCTCAATGAGTTGCACGAGAGGAACATGAAAAATCCAAAAGGTGGGAAATATACATTTCCAGTTTTATTGGATGCAGACTGGGATTTAGGAGTTGTGAAGGATAGGGAAGCTCTTTGCTTATATGCGGCATCATATGGAAATGTTGCTAGATTTATTAATCACAGATGTTTGGATGCAAACTTAATTCAGATCCCAGTTGAAGTCGAGTGCCCAACTCATCGATACTATCATTTTGCGTTCTTTGCAACCAGAAAAATAGCAGCACAGGAAGAACTCACTTGGGATTATGGCATCAACTTTGACGATCACGATGAGTCTGTTGAGCTTTTCCGGTGCAGATGTGGCAGTAAATTCTGCAGGAATATTAAGCGATCAAATAGATCCATCAGATCGTCAGTTGCATGA 2205 0.4245 MAPNPRVIAAFSAMANLGIHESKVKPVLKKLLKLYDKNWELIEEESYRALADAIFEEEENKLLEPDQNNKNKKDGEVDNEEAHMHEEPMRPLKRLRLRGQEGQSSRPLTNRGHSSAAFPLKTPKLEEGTVPEISSRLQPQCSAALSDGNARNDAPHVPPQDAIVNRGKQPVSPQVTPRGGRSMSDHTSLAEPLKESVAEPRAAPLANNKMLVPFTLIKPKDEPVDDLPDCEIPLAMIPPEPSSGGDSLMDAAEKQDDHDTLGSQCRDEDVGHEYSSSIEERTSYVDVALPSIGEEQCVKIKQTDDVSKESETNVSPSVRRNKDPVIENEISVRSFSALAEPEVPSSLPCPSDQDEAVLASKKVRTNGFLQRNGGKDPEDPISTNSGPLVVIPKCEFTTENDARAVHNVNDLAKGEERVNISWVNNTTNDLPPPFHYIPQNLVYRDAYVNFSLSRIGNEDCCSACKGNCVLSSKPCPCTNKTGGEFAFTAHGLLKEAFLDECIAINRDFQNYFYCKACPFEQSKNDDCLEPCKGHLKQKFIKECWSKCGCGKHCGNRVVQRGISCKLQVFLTSDGKGWGLRTLEDLPKGTFVCEFVGEILTLNELHERNMKNPKGGKYTFPVLLDADWDLGVVKDREALCLYAASYGNVARFINHRCLDANLIQIPVEVECPTHRYYHFAFFATRKIAAQEELTWDYGINFDDHDESVELFRCRCGSKFCRNIKRSNRSIRSSVA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02155 734 ProSiteProfiles SET domain profile. 564 697 IPR001214 GO:0005515
Viun1g02155 734 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 730 - -
Viun1g02155 734 MobiDBLite consensus disorder prediction 61 124 - -
Viun1g02155 734 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 734 IPR025776 -
Viun1g02155 734 SUPERFAMILY SET domain 418 720 IPR046341 -
Viun1g02155 734 CDD SET_SETDB-like 432 697 - -
Viun1g02155 734 MobiDBLite consensus disorder prediction 102 116 - -
Viun1g02155 734 Gene3D SET domain 411 722 IPR046341 -
Viun1g02155 734 SMART set_7 564 703 IPR001214 GO:0005515
Viun1g02155 734 ProSiteProfiles Pre-SET domain profile. 460 561 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun1g02155 734 MobiDBLite consensus disorder prediction 145 201 - -
Viun1g02155 734 MobiDBLite consensus disorder prediction 61 100 - -
Viun1g02155 734 Pfam SET domain 576 697 IPR001214 GO:0005515
Viun1g02155 734 Gene3D - 1 60 IPR043017 -
Viun1g02155 734 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Viun1g02155 734 MobiDBLite consensus disorder prediction 167 183 - -
Viun1g02155 734 SMART preset_2 408 548 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun1g02155 734 Pfam Pre-SET motif 412 556 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02155 Viun-Chr1 32788838 32795859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02155 410 720 Su(var)3-9 homologs AT1G73100 29.819 6.85e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun1g02155 Pre-SET 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02155 - - var:108323268 1318.91