Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02152 ATGGAAGCACGTCCTACTTTCTCTATTGAAAGATCAAATGCTAAGCAACACAATAACTTGGGGATGTCTGAAGCATTTCCTTCATCGATGCCTGTCCTTCCAATGACTCTAGAAGGGACATGCCCCAAATTATCTGATTCTCAGCCAGCATTTATGGAAAAAGAGCTTAAAGCAAAACCTTTTACTCGTTCAAATCATTTAACTACCAGCGGAGCTGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTCATGAAAAGCACCCTATAAATACTCCTTTTATTTCACAGTCATTGAATAACATGGCTTCACTGCCATTATCTTATTCTTCAAATAGTGAGCCATTACCTTCTACAACATCAACACCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGATTCCCTGTCTAGCTTTCTTGATTTCCCTCCCAATACCTCAATTGATAATAGTCAAGTAGAAAGCAGTGCCGGCAATATTATGGCAAATGAAGAGTATTCTAAGCGAAGTGATTGGCAGGAGTGGGCTGACCAGTTAATCGGTGATGATGATCCGTTGACTTCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCGAAGGCCTCAAATTCATCTTCACAACTTCCAATAGGACACCAATCCCAAAGCCATCAACAACTTAGTGTTTCATCTGGAGAAAATCGTGTTGGTGTTGCCCCATCTTCGTCAGCAAATTCGGTACCTTCCAAGCCACGAATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTTATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGCCACTTACAGAAGTACAGGACAGCTAGATATAGGCCCGAGTCATCTGAAGGAGCTGCAGAGAAAAAACTAAGTCCAATTGAAGAGATATCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAGCAAGGAAGGTACCTTCAGATGATGTTTGAGAAACAGTGCAAATCTGGCATTGAAACATTTAAGGCATCACCGACTGCCGTTGAGAGTCCATCTGGAGTTTCTTCTGATGCCATGAAAGATTCTACAGCCAAAACTGATTCCGAAACTGTCAAAGTGGACCTTTGCGAGTCAGGACCTAATCAAGCCAATGGCAGTACCAAAGTTGAGGAAAGCTCATCGAAAGTGGATGAGAAGCAGGATCCTCATGAAAGTAAAGCTTCTGAGAATCCTAAGCAACATGCTAGTGAAGATAGTTCTCAAGCCCCAAAGCGTCAAAGGACTGAGGATTAA 1455 0.4213 MEARPTFSIERSNAKQHNNLGMSEAFPSSMPVLPMTLEGTCPKLSDSQPAFMEKELKAKPFTRSNHLTTSGAVGHMFSSSPGYSTDLHHSSFSSHEKHPINTPFISQSLNNMASLPLSYSSNSEPLPSTTSTPYSNGNSVSWHTDSLSSFLDFPPNTSIDNSQVESSAGNIMANEEYSKRSDWQEWADQLIGDDDPLTSNWNDLLADNIQDLEPKASNSSSQLPIGHQSQSHQQLSVSSGENRVGVAPSSSANSVPSKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASPTAVESPSGVSSDAMKDSTAKTDSETVKVDLCESGPNQANGSTKVEESSSKVDEKQDPHESKASENPKQHASEDSSQAPKRQRTED 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02152 484 MobiDBLite consensus disorder prediction 429 444 - -
Viun1g02152 484 Gene3D - 257 316 - -
Viun1g02152 484 MobiDBLite consensus disorder prediction 9 23 - -
Viun1g02152 484 MobiDBLite consensus disorder prediction 399 484 - -
Viun1g02152 484 MobiDBLite consensus disorder prediction 399 415 - -
Viun1g02152 484 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Viun1g02152 484 NCBIfam myb-like DNA-binding domain, SHAQKYF class 258 312 IPR006447 GO:0003677
Viun1g02152 484 Pfam MYB-CC type transfactor, LHEQLE motif 343 390 IPR025756 -
Viun1g02152 484 MobiDBLite consensus disorder prediction 214 260 - -
Viun1g02152 484 FunFam Myb family transcription factor 257 315 - -
Viun1g02152 484 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 228 474 IPR044848 GO:0003700
Viun1g02152 484 MobiDBLite consensus disorder prediction 445 484 - -
Viun1g02152 484 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Viun1g02152 484 Coils Coil 346 366 - -
Viun1g02152 484 MobiDBLite consensus disorder prediction 214 258 - -
Viun1g02152 484 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 315 IPR017930 -
Viun1g02152 484 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02152 Viun-Chr1 32768993 32776055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02152 1 432 G2-like Transcription Factor Family AT4G28610 48.430 3.22e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun1g02152 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02152 - - gmx:100810560 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02152 1 32768993 32776055 Viun1g02152 1 32768993 32776055 ECH
Viun1g02152 1 32768993 32776055 Viun7g01282 7 14802825 14815592 ECH
Viun1g02152 1 32768993 32776055 Viun7g01282 7 14802825 14815592 PCT