Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02150 ATGACAACTTTCCAAAAGGTTCATGCTCTAGCCTTTCATATACTCTTGCTAGCTTTGCTTCCATTGAAAATCCTTTCATCACCAACAGCAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTCTCTCCCCTCCTCTTCCTCCTTCTCTAAACTCATGGTCTCTCACCAACCTTTCCAACCTTTGCATTTGGGATGCCATTGTTTGTGACAATACCAACACAACAGTCTCACAGATAAACTTGTCTGCTGCCAATATCACTGGGACTCTCTCTGATTTTGATTTTGCTTCCCTCTCTAACCTCACCCAACTCAACCTCAATGCCAACAATTTTGAGGGGTCAATACCATCAGCAATTGGTAACCTCTCCAAGCTCACACTGTTGGACTTGGGGAACAACTTATTTGAAGACACACTGCCTAATGAGCTAGGCCAGCTAAGGGAGCTTCAATACCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCTAATTACTTTATAACTCCTCCTCACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCCTTACATCTAAATCCATCACTCACTGGTCAATTCCCAAGTTTCATACTGGAGTGCCATAACCTCACATACCTTGACATCTCTCAGAATGGATGGAATGGCAGTATACCAGAATCCTTGTATACCAATTTGGGCAAGCTAGAATACCTCAACCTCACCAACAATGGGTTTGAAGGAAAACTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTCCGTATTGGTAATAACATGTTTAATGGTCCTGTTCCCACTGAGATAGGATTCATATCCGGGCTTCAAATTCTTGAACTGTGTAACATTTCTGCCCATGGAAAAATTCCTTCTTCCATAGGCCAACTCTGGGAGCTATGGCATCTTGATCTTAGTATAAATTCTTTTAACTCTACAATCCCTTCGGAGCTTGGCCTGTGCACAAATCTATCCTTCTTGAGTTTAGCAGTGAATGATTTGACTGGTCCTTTGCCTTTGTCATTAGCTAGTCTGTCTAGAATATCAGAATTGGGAATATCACATAATTCCTTTTCTGGTGAACTTTCTGCCTCGCTCATCTCTAACTGGACCCAGTTGATCTCCTTGCAAATCCAAAACAATAACTTTACAGGAGAGCTTCCTCCACATATTGGCCTGTTGAAAAAACTTAACTTCCTCTATCTGTTCAATAATCACTTCTCTGGTTCCATTCCTGTAGAGATTGGAAACCTGAAGGAAATACGAGAGTTAGACCTTTCACAAAACCAATTCTCTGGCCCACTTCCACTAACTCTTTGGAGTCTGACAAACATTCAAGTCATGAATCTTTTCTTCAATGAGCTCTCTGGAACCATCCCCCCGGATATTGGAAACTTGACCTCACTCCAAATCTTTGATGTCAGCAACAATAACATGTATGGGGAGTTGCCAGAAACCATTGCTCAACTAACCGCTTTAAGAAATTTTTCTGTGTTCAGCAATAATTTCACCGGCAGCATTTCTAGACAATTTGGAAAGAATAATCCTTCTTTGGCTCACGTCTACCTTTCAAACAACAGTTTCTCGGGAGAATTGCCACCTGACATATGCAGTGGGAGCAAGCTAACAATTTTCTCAGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTTAGATATTGTTCATCACTAACTAGAGTTCGGCTTGATGATAACCAGCTCACTGGAAACATCACAGACGCATTTGGGGTTCTCCCAAATCTTGTTTTTATCTCACTTAATTTAAATCAACTTGTTGGTGAGCTATCCTCGCTGTGGGGCGAGTGTGCCAGCTTAACCAGTATGGATATGGGAAGCAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGTTGAGTCAATTAAGGTATCTAAGCCTTCATTCCAACGATTTCACTGGTAGTATCCCACCCGAAATCGGAAATCTAAGCCTGCTTTACACGTTCAATCTGAGCAGTAACCATTTATCCGGAGAAATCCCAAGGAGTTATGGGAGATTGGCTCAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGTATTCCTAAAGAGCTTGGTGATTGTGATCGTTTACTGAGTCTCAATTTAAGCCATAACAATGTATCTGGGGAGATACCAAATGAACTTGGCAATCTGTTCTCACTGCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCTGGGGCTCTTCCCCAAAACCTTGAAAAGTTAACTGCATTGGAGATTCTCAATGTGTCACACAACTATCTATCAGGGACAATCCCACGATCATTTTCAAGCATGCTCAGCCTTCAAGCTATTGATTTTTCTTACAACAAATTGAGTGGTTCAATCCCCACAGGTCGTGTTTTCCAGACAGCGACTGCTGAAGTCTATGCTGGAAACTCAGGTTTGTGCGGTGAGATAAAAGGATTAATTTGCCCCAAATCACTTTCTCCGGACAAATCTGGAGGAGTTAACAAAAAGGTTCTTCTTGGTGTTATCATACCAGTTTTTGCCTTATTAATCGGGATAGTTAGTGTTGGAGTAATACTTCGCCGCCGGCATGACATGAAACACCTTGATGAAGAGTCCAAAAGCCTTGAAAAAGATGATGAGCCAATTAGCATGGTCTGGGGAAGAGATGGAAAATTCACATTCTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAATTACTCACGGGTCAAGTCGTTGCTGTCAAGAAGCTCAACTTATCCGACTCTGATGACATTCCAGCAATGAACCGCCAGAGCTTTCTGAATGAGATAGAAGCACTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGAACAAATGTTCTTGGTTTATGAATATATAAACAGAGGAAGTTTAGCAAAAGTGTTGTATGGAGAGGAAGGAAAGTCGGAGCTAAGCTGGGCCACAAGGCTAAAAATTGTGGAAGGAATAGCACATGCAATTTCATACCTGCACACAGATTGCTCCCCACAAATTGTGCACCGGGATGTAACACTGAATAACATTCTACTAGACTCCGATTTTGAACCTCGTCTTTCAGATTTTGGCACAGCAAAGCTACTAAGCTCAGACACTTCAACTTGGACCTCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAACTAGCACAAACAATGAAAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATAATGATGGGAAAGCATCCTGGAGAACTGTTGGGTACACTATCTTCGAACAAGTATTTGTCATCAACGGAGGAACCACAGGTGCTACTGAAGGACGTGCTAGACCAAAGGCTTGCACCTCCAACAGGGCAATTGGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCACACGTGAGGCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAACTATCGGCAACTACTCAGGCCTATCTTTCCCAGCCATTTGCCATGATAACCTTGAACAAGCTTAGAAGCTTTCAGAAATAG 3687 0.425 MTTFQKVHALAFHILLLALLPLKILSSPTAEAEALVKWKNSLSPPLPPSLNSWSLTNLSNLCIWDAIVCDNTNTTVSQINLSAANITGTLSDFDFASLSNLTQLNLNANNFEGSIPSAIGNLSKLTLLDLGNNLFEDTLPNELGQLRELQYLSLYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPHWSQYSCMPSLTRLALHLNPSLTGQFPSFILECHNLTYLDISQNGWNGSIPESLYTNLGKLEYLNLTNNGFEGKLSPNLSMLSNLKELRIGNNMFNGPVPTEIGFISGLQILELCNISAHGKIPSSIGQLWELWHLDLSINSFNSTIPSELGLCTNLSFLSLAVNDLTGPLPLSLASLSRISELGISHNSFSGELSASLISNWTQLISLQIQNNNFTGELPPHIGLLKKLNFLYLFNNHFSGSIPVEIGNLKEIRELDLSQNQFSGPLPLTLWSLTNIQVMNLFFNELSGTIPPDIGNLTSLQIFDVSNNNMYGELPETIAQLTALRNFSVFSNNFTGSISRQFGKNNPSLAHVYLSNNSFSGELPPDICSGSKLTIFSVNNNSFSGPLPKSFRYCSSLTRVRLDDNQLTGNITDAFGVLPNLVFISLNLNQLVGELSSLWGECASLTSMDMGSNKLSGKIPSALSKLSQLRYLSLHSNDFTGSIPPEIGNLSLLYTFNLSSNHLSGEIPRSYGRLAQLNFLDLSNNNFSGSIPKELGDCDRLLSLNLSHNNVSGEIPNELGNLFSLQIMLDISSNSLSGALPQNLEKLTALEILNVSHNYLSGTIPRSFSSMLSLQAIDFSYNKLSGSIPTGRVFQTATAEVYAGNSGLCGEIKGLICPKSLSPDKSGGVNKKVLLGVIIPVFALLIGIVSVGVILRRRHDMKHLDEESKSLEKDDEPISMVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKKLNLSDSDDIPAMNRQSFLNEIEALTGVRHRNIIKLYGFCSCREQMFLVYEYINRGSLAKVLYGEEGKSELSWATRLKIVEGIAHAISYLHTDCSPQIVHRDVTLNNILLDSDFEPRLSDFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTMKVTEKCDVYSFGVVVMEIMMGKHPGELLGTLSSNKYLSSTEEPQVLLKDVLDQRLAPPTGQLAEAVVFTMTIALACTREAPESRPIMRAVAQELSATTQAYLSQPFAMITLNKLRSFQK 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02150 1228 Gene3D Phosphorylase Kinase; domain 1 890 1009 - -
Viun1g02150 1228 PANTHER LEUCINE RICH REPEAT KINASE 2 506 1207 - -
Viun1g02150 1228 Pfam Protein kinase domain 931 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02150 1228 Gene3D Ribonuclease Inhibitor 509 848 IPR032675 -
Viun1g02150 1228 Gene3D Ribonuclease Inhibitor 190 386 IPR032675 -
Viun1g02150 1228 FunFam MDIS1-interacting receptor like kinase 2 193 387 - -
Viun1g02150 1228 SUPERFAMILY RNI-like 287 620 - -
Viun1g02150 1228 CDD STKc_IRAK 935 1203 - -
Viun1g02150 1228 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1055 1067 IPR008266 GO:0004672|GO:0006468
Viun1g02150 1228 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 434 531 - -
Viun1g02150 1228 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 535 850 - -
Viun1g02150 1228 SUPERFAMILY Protein kinase-like (PK-like) 910 1203 IPR011009 -
Viun1g02150 1228 Gene3D Ribonuclease Inhibitor 387 507 IPR032675 -
Viun1g02150 1228 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Viun1g02150 1228 ProSiteProfiles Protein kinase domain profile. 929 1211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02150 1228 FunFam MDIS1-interacting receptor like kinase 2 1010 1209 - -
Viun1g02150 1228 FunFam Leucine-rich repeat receptor protein kinase MSP1 892 1009 - -
Viun1g02150 1228 ProSitePatterns Protein kinases ATP-binding region signature. 935 958 IPR017441 GO:0005524
Viun1g02150 1228 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Viun1g02150 1228 SUPERFAMILY L domain-like 535 825 - -
Viun1g02150 1228 Gene3D Transferase(Phosphotransferase) domain 1 1010 1216 - -
Viun1g02150 1228 SMART LRR_typ_2 98 121 IPR003591 -
Viun1g02150 1228 SMART LRR_typ_2 776 799 IPR003591 -
Viun1g02150 1228 SMART LRR_typ_2 655 679 IPR003591 -
Viun1g02150 1228 SMART LRR_typ_2 536 559 IPR003591 -
Viun1g02150 1228 SMART LRR_typ_2 245 269 IPR003591 -
Viun1g02150 1228 SMART LRR_typ_2 414 438 IPR003591 -
Viun1g02150 1228 SMART LRR_typ_2 122 146 IPR003591 -
Viun1g02150 1228 SMART LRR_typ_2 703 727 IPR003591 -
Viun1g02150 1228 SMART LRR_typ_2 317 341 IPR003591 -
Viun1g02150 1228 SMART LRR_typ_2 486 510 IPR003591 -
Viun1g02150 1228 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Viun1g02150 1228 Pfam Leucine rich repeat 758 813 IPR001611 GO:0005515
Viun1g02150 1228 SUPERFAMILY L domain-like 43 380 - -
Viun1g02150 1228 Pfam Leucine Rich Repeat 247 267 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02150 Viun-Chr1 32764037 32768482 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02150 25 649 Receptor kinase-like Gene Family AT4G08850 32.376 3.46e-79 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun1g02150 Pkinase 7.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02150 - - pvu:PHAVU_001G163700g 2020.74