Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02148 ATGCTAGACATGACAAATTTTCAAAAGGTTCACACTCTACTCCTTCCTATTCTCTTCCTATGTTTGCTTCCATTGAAAATCGCTTCATCAGCAACAGCAGAAGCAGAAGCACTTGTCAAATGGAAAAACACTCTATCCCCTCCTCTTCCTCCTTCTCTAAACTCATGGTCTCTCACCAACCTTTCCAACCTCTGCATTTGGGATGCCATTGTTTGTGACAATACCAACACAACAGTCTCACAGATAAACTTGTCTGCTGCCAATATCACTGGGACTCTCTCTGCTTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCAATACCAACAAGTTTGAGGGGTCAATACCATCAGCAATTGGTAACCTCTCCAAGCTCACACTGTTGGACTTGGGGAACAACTTATTTGAAGACACACTGCCTAATGAGCTAGGCCAGCTAAGGGAGCTTCAATACCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCTAATTACTTTATAACTCCTCCTCACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCATCACTCACTGGTCAATTCCCAAGTTTCATACTGGACTGCCATAACCTCACATACCTTGACATCTCTCAGAATGGATGGCATGGCAGTATACCAGAATCCTTGTATAGCAATTTGGGCAAGCTAGAATACCTCAACCTCACCAACAGTGGGTTTGAAGGAAAACTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGTATCGGTAATAACATGTTTAATGGTCCTGTTCCCACTGAGATAGGATTATTATCTGGGCTTCAATTTCTTGAACTGAATAACATTTCTGCCTATGGGAAGATTCCTTCTTCCTTAGGCCAACTTAGGGAGCTCTGGCATCTTGATCTCAGTTTAAATTCTTTTAACTCTACAATCACTTCTGAGCTTGGCCAGTGCACAAATTTATCCTTCATGAGTTTAGCAGAGAATGATTTGACTGGTCCTTTGCCTACGTCATTGGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAATTCCTTTTCTGGTGAACTTTCTGCTACGCTCCTCTCTAATTGGACCCAGCTTACCTCCTTGCAAGTCCAAAACAATCATTTTACTGGAAATATTCCTTCAGAGATTGGCTTGTTGAAAAGAATTAAGTACCTCTATCTGTACAATAATCACTTCTCTGGTCTCATTCCTGTTGAGATTGGAAACCTGATGGAAATGACAGAGTTAGACCTTTCACAAAACCAACTCTCTGGCCCCATTCCATCAACTCTTTGGAATATGACAAGCATTCGAGTCATGAATCTTTTCTTCAATGAGCTCTCTGGAATCATTCCCCCGGATATTGGAAACTTGACCTCTCTTGAAATCTTTGATGTCAACAGCAATAACTTGTATGGGGAATTGCCAGAAACCATTGTTCAACTAACTCCATTAAGAAAATTTTCTGTGTTCAGCAATAACTTCACAGGCATAATTCCTAGAGAATTTGGAAAGGGAAACCCTTCTTTGACTAATGTCTACCTTTCAAACAACAGCTTTTCCGGAGAACTGCCACTCGACTTGTGCAGTGGTGGGCAGCTAACTATTTTGGCTGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCATCACTTGTTAGACTTCGGCTTGATAATAATCAGCTCACCGGAAACATCACAGACGCATTTGGGGTTCTCCCAAATCTTGATTTGATCTCACTTAGTACAAACCAACTGGTTGGTGAGCTTTCCCCGGAATGGGGCGAGTGTGCCAGTTTAACCAGTATGGATATGGGAAACAACAAACTTTCTGGAAAAATTCCTTCTGCGCTCAGTAAGCTGAGCCAACTAGGGTATCTAAACCTTCATTCCAATGAATTCACTGGTAGTATCCCACCTGAAATCGGGAATCTAAGCCGGCTTTTCAGATTCAATTTGAGCAGTAACCATTTATCCGGAGAAATCCCAAAGAGTTATGGTAGATTGGCTAAGCTAGATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAGCTTGGTGATTGTGATGGATTACTGAGCCTGAATTTAAGCCATAACAGTCTATCTGGGGAAATACCAAATGAACTTGGCAATCTGTTCTCACTGCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCCGGGGCTCTTCCCCAGAACCTTGAAAAGTTAACAGCATTGGAGATTCTCAATGTGTCACGCAACCATCTTTCAGGGACAATCCCACGATCATATTCAAGCATGATCAGCCTTCAATCTATTGACTTTTCTTATAACAAACTGAGTGGTTCAATCCCCACAGGCCGTGTTTTCCAGACAGCTACTGCCGAAGCCTATGCTGGGAACTCAGGTTTGTGTGGTGAGATAAATGGATTAACTTGCACCAAATCACTTTCCCCGGACAAATCTGGAGGAGTTAACAAAAAGGTTCTTCTTGGGGTTATCATACCAGTTTGTGTATTAATTGGAATAATTATTGTTGGAGTAATACTTCGCCGGCGGCATAGCATAAAACACCTTGATGAAGAGTCCAAAAGCAATGAAAAAAGTGATCAGCCTATCAGCGTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAATTGCTCACAGGTCAAGTCGTTGCTGTCAAGAGGCTCAACATATCAGACTCTGATGACATTCCACCGATGAACCGCCAGAGCTTTTTGAATGAAATAGAAGCACTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGGTTCTGTTCATGCAGGGAACAAATGTTCTTGGTTTATGAATATATAGACAGAGGAAGTTTGGCAAAGGTGTTGTATGGAGAGGAAGGAAAATTGGAGCTAAGGTGGGCCAAAAGGCTAAAGATTGTGCAAGGATTAGCACATGCAATTTCATACCTGCACACAGATTGCTCCCCACCAATCGTGCACCGGGATGTAACACTGAATAACATACTATTAGACTCCGACTTAGAACCTCATCTTGCAGATTTTGGCACAGCAAAGCTACTAAGCTCAGACACTTCAACTTGGACCTCAGTTGCTGGATCCTATGGTTACATGGCTCCAGAACTAGCACAAACAATGAAAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATAATGATGGGAAAGCATCCTGGAGAACTGTTGGGTACACTATCTTCGAACAAGTATTTGTCATCAACGGAGGAACCACAGGTGCTACTGAAGGACGTGCTAGACCAAAGGCTTGCACCTCCAACAGGGCAATTGGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCACACGTGAGGCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAGCTATCGGCTACTACTCAAGCTTATATTTCCCAGCCATTTGGCATGATAACCATAAACAAGCTTAGTGGCTTCCAGAAATAG 3693 0.4254 MLDMTNFQKVHTLLLPILFLCLLPLKIASSATAEAEALVKWKNTLSPPLPPSLNSWSLTNLSNLCIWDAIVCDNTNTTVSQINLSAANITGTLSALDFASLPNLTQLNLNTNKFEGSIPSAIGNLSKLTLLDLGNNLFEDTLPNELGQLRELQYLSLYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPHWSQYSCMPSLTRLALHLNPSLTGQFPSFILDCHNLTYLDISQNGWHGSIPESLYSNLGKLEYLNLTNSGFEGKLSPNLSMLSNLKELRIGNNMFNGPVPTEIGLLSGLQFLELNNISAYGKIPSSLGQLRELWHLDLSLNSFNSTITSELGQCTNLSFMSLAENDLTGPLPTSLANLTKISELGLSDNSFSGELSATLLSNWTQLTSLQVQNNHFTGNIPSEIGLLKRIKYLYLYNNHFSGLIPVEIGNLMEMTELDLSQNQLSGPIPSTLWNMTSIRVMNLFFNELSGIIPPDIGNLTSLEIFDVNSNNLYGELPETIVQLTPLRKFSVFSNNFTGIIPREFGKGNPSLTNVYLSNNSFSGELPLDLCSGGQLTILAVNNNSFSGPLPKSLRNCSSLVRLRLDNNQLTGNITDAFGVLPNLDLISLSTNQLVGELSPEWGECASLTSMDMGNNKLSGKIPSALSKLSQLGYLNLHSNEFTGSIPPEIGNLSRLFRFNLSSNHLSGEIPKSYGRLAKLDFLDLSNNNFSGSIPKELGDCDGLLSLNLSHNSLSGEIPNELGNLFSLQIMLDISSNSLSGALPQNLEKLTALEILNVSRNHLSGTIPRSYSSMISLQSIDFSYNKLSGSIPTGRVFQTATAEAYAGNSGLCGEINGLTCTKSLSPDKSGGVNKKVLLGVIIPVCVLIGIIIVGVILRRRHSIKHLDEESKSNEKSDQPISVVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNISDSDDIPPMNRQSFLNEIEALTGVRHRNIIKLYGFCSCREQMFLVYEYIDRGSLAKVLYGEEGKLELRWAKRLKIVQGLAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPHLADFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTMKVTEKCDVYSFGVVVMEIMMGKHPGELLGTLSSNKYLSSTEEPQVLLKDVLDQRLAPPTGQLAEAVVFTMTIALACTREAPESRPIMRAVAQELSATTQAYISQPFGMITINKLSGFQK 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02148 1230 SUPERFAMILY L domain-like 48 383 - -
Viun1g02148 1230 SUPERFAMILY Protein kinase-like (PK-like) 907 1205 IPR011009 -
Viun1g02148 1230 SUPERFAMILY RNI-like 302 624 - -
Viun1g02148 1230 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 538 853 - -
Viun1g02148 1230 SUPERFAMILY L domain-like 585 842 - -
Viun1g02148 1230 ProSitePatterns Protein kinases ATP-binding region signature. 937 959 IPR017441 GO:0005524
Viun1g02148 1230 Gene3D Ribonuclease Inhibitor 523 851 IPR032675 -
Viun1g02148 1230 FunFam MDIS1-interacting receptor like kinase 2 371 537 - -
Viun1g02148 1230 FunFam MDIS1-interacting receptor like kinase 2 31 192 - -
Viun1g02148 1230 FunFam Leucine Rich Repeat family protein, expressed 193 289 - -
Viun1g02148 1230 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Viun1g02148 1230 PANTHER LEUCINE RICH REPEAT KINASE 2 486 1209 - -
Viun1g02148 1230 SMART LRR_typ_2 320 344 IPR003591 -
Viun1g02148 1230 SMART LRR_typ_2 610 634 IPR003591 -
Viun1g02148 1230 SMART LRR_typ_2 125 149 IPR003591 -
Viun1g02148 1230 SMART LRR_typ_2 658 682 IPR003591 -
Viun1g02148 1230 SMART LRR_typ_2 779 802 IPR003591 -
Viun1g02148 1230 SMART LRR_typ_2 441 465 IPR003591 -
Viun1g02148 1230 SMART LRR_typ_2 803 828 IPR003591 -
Viun1g02148 1230 SMART LRR_typ_2 101 124 IPR003591 -
Viun1g02148 1230 SMART LRR_typ_2 489 513 IPR003591 -
Viun1g02148 1230 SMART LRR_typ_2 706 730 IPR003591 -
Viun1g02148 1230 Pfam Protein kinase domain 933 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02148 1230 Gene3D Transferase(Phosphotransferase) domain 1 1012 1216 - -
Viun1g02148 1230 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Viun1g02148 1230 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1057 1069 IPR008266 GO:0004672|GO:0006468
Viun1g02148 1230 ProSiteProfiles Protein kinase domain profile. 931 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02148 1230 FunFam Leucine-rich repeat receptor protein kinase MSP1 894 1011 - -
Viun1g02148 1230 CDD STKc_IRAK 937 1205 - -
Viun1g02148 1230 FunFam MDIS1-interacting receptor like kinase 2 1012 1211 - -
Viun1g02148 1230 Gene3D Phosphorylase Kinase; domain 1 892 1011 - -
Viun1g02148 1230 Gene3D Ribonuclease Inhibitor 192 508 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02148 Viun-Chr1 32752127 32756981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02148 8 652 Receptor kinase-like Gene Family AT4G08850 33.180 5.20e-84 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun1g02148 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02148 - - pvu:PHAVU_001G163700g 2010.34