Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02139 ATGGGGAGTAGGGTTAAGCAGGGCAGGAGATTGCAGAAGATGATGAAGTGTCTTTGTGTGAGGGAGCCGGTGAAAGGAGAGGATGAAACGATTCCTTCCTCGGAATCTCTTGGAATCAGGGAATTTTATTCTTCAACGGCGAGTGGGCGTTCTGGCCTCGATGGAGAAATAGAGATGTTGGGGTCTGATTCTGGTAAAATAGACGAAACTGAATTGTCTTTGCGTGAGAGTGGCATCTTGGATAACGAGGAAGCCAGTGCTCTGTTAGGAAGAGATGAATATCATAAAGGGAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCAGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACGCCCCAAAAAACATTCCTATTATTACGCTACTCCCCCAATGTCCATGTACACGGTTGGATTACTGTTGGAAGCAATTTTCCTAAAAGCGAAATGCTTACAGCTTCTAGGGAGGTTTAAAGAATCTGCCCAAACTTGTAAAGTTATTCTGGACACAGTTGAATCTTCATTCCCTGAAGGCTTGCCTCAAAACTTCGGCAATGAAGGTAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGATTTGTGGAAACTTGCTGATTCTTCCCGTGATGTTATTTTGTCTTACCGGCGCGCACTCCTACACAAATGGAATCTTGATGCAAAAACCATAGCAAGGATTCAGAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGCAATCCCCTCGAATCTTCGTTCCCATATGGACAACTCTTTTGTACCTAGAAATAACTTAGAAGAGGCTATACTCCTTCTAATGATTTTGCTAAGAAAAATTACTCTAAAAAAACTTGAGTGGGATCCATCAATTTTGGATCACCTTGCATTTGCTCTATCTGTTTCAGGGGATTTGACAGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGGACTGTCAATCGTAGAGAAAGGTACCAGGCCTTATCTCTCTGTTATTATGGAGCAGGTAAAGACTTGGTAGCATTGAATCTTCTTAGAAAATTGTTGAGTAAAGAGGACCCGACACATGTTCCCTCTTTGTTAATTGCTTCTAAGATTTGTTGTGAGAACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTCGCAAGGTGCTTGAGAACTTGGATGGAAGATGTAATCAGTTGGAAGGTCTTTCTAGTTGTTTACTTGGTGTTTCACTTTCAACACACTCAAAATTTTGCATTTCTAATTCTGAGAGGGTTGAGAGACAATCCGAGGCACTTCATTCTCTGGAAACTGCACACAAAGTGACTGGAATGAGTAACCCCCTTGTAATATACAGTTTGAGTTTAGAATATGCAGAGCAAAGGAAGTTGGAAGCGGCACTTCATTATGCAAAGTGCTTTCTAAACTTGGAAGCTGGGTCTAGTGTTAAAGGGTGGTTATTGTTAGCCCGAATATTATCAGCTCAAAAACAGTTTTTAGATGCCGAATCTATCCTCAATGAGGCCTTGGATCAGACTGGAATATGGGATCAAGGAGAGTTACTGCGAACAAAAGCTAAACTACAAATAGCACAGGGCCAGTTAAAAACTGCCATTGAAACATATACCCACCTTCTTGCTATTCTCCTAGTTCAGAGAAAGACGTTTGGTTCAAGGAAGACGCTATATAAGGACTACATAGATCATGCTAGGAACATGGAAATAGAAATATGGCATGATCTTGCGTATGTGTACATAAGTCTGTCACGATGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTACTAGATGTCATGCAATAGGTACTATGTACGAAGCAAAGGGAGTTCACGAAGAGGCTTTAAAAGCTTTTCGTGATGCTTTGAATATAGATCCCGGACATGTCCCTAGCTTGATCTCTACTGCGGTGGTCCTTAGGCGGTGCAGTAATGGGTCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTACGACATGACAGATATAACGCTTCTGCATGGTATAATCTTGGCATTTTTCACAAGGACGAGGGTACAATGATAGAAGCTGCAGAATGTTTTGAGACAGCCAACTTTCTTGAAGAATCTGCTCCAGTTGAACCTTTCAGATGA 2181 0.4159 MGSRVKQGRRLQKMMKCLCVREPVKGEDETIPSSESLGIREFYSSTASGRSGLDGEIEMLGSDSGKIDETELSLRESGILDNEEASALLGRDEYHKGNIEAALRVYEKINIGAVTSKMKISLAKSRERPKKHSYYYATPPMSMYTVGLLLEAIFLKAKCLQLLGRFKESAQTCKVILDTVESSFPEGLPQNFGNEGKLQETLSKVVELLPDLWKLADSSRDVILSYRRALLHKWNLDAKTIARIQKEFVVFLLYSGGEAIPSNLRSHMDNSFVPRNNLEEAILLLMILLRKITLKKLEWDPSILDHLAFALSVSGDLTALANQWEELLPGTVNRRERYQALSLCYYGAGKDLVALNLLRKLLSKEDPTHVPSLLIASKICCENPDLAKDGASLARKVLENLDGRCNQLEGLSSCLLGVSLSTHSKFCISNSERVERQSEALHSLETAHKVTGMSNPLVIYSLSLEYAEQRKLEAALHYAKCFLNLEAGSSVKGWLLLARILSAQKQFLDAESILNEALDQTGIWDQGELLRTKAKLQIAQGQLKTAIETYTHLLAILLVQRKTFGSRKTLYKDYIDHARNMEIEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSATRCHAIGTMYEAKGVHEEALKAFRDALNIDPGHVPSLISTAVVLRRCSNGSNPAIRSFLMDALRHDRYNASAWYNLGIFHKDEGTMIEAAECFETANFLEESAPVEPFR 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02139 726 Gene3D Tetratricopeptide repeat domain 64 581 IPR011990 GO:0005515
Viun1g02139 726 PANTHER PROTEIN NPG1 15 726 IPR043376 -
Viun1g02139 726 ProSiteProfiles TPR repeat profile. 687 720 IPR019734 GO:0005515
Viun1g02139 726 Gene3D Tetratricopeptide repeat domain 609 714 IPR011990 GO:0005515
Viun1g02139 726 Pfam Tetratricopeptide repeat 619 649 IPR019734 GO:0005515
Viun1g02139 726 SUPERFAMILY TPR-like 436 556 IPR011990 GO:0005515
Viun1g02139 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Viun1g02139 726 SMART tpr_5 527 560 IPR019734 GO:0005515
Viun1g02139 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Viun1g02139 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Viun1g02139 726 SMART tpr_5 150 183 IPR019734 GO:0005515
Viun1g02139 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Viun1g02139 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Viun1g02139 726 SUPERFAMILY TPR-like 528 713 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02139 Viun-Chr1 32681385 32686970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02139 15 726 Calmodulin-binding Proteins AT4G28600 54.746 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02139 K21843 - gmx:100784353 1232.62