Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02124 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTCTATCCCAGTGACGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTCAAGGGTACCTTGGTGGAAATCGACCTCCACATATGTGAACCATGGCAACTCCCAGAGGTGGCGAAGCTGAATGCGAACGAGTGGTACTTCTTCAGCTTCCGGGACCGCAAATACGCGACGGGGTTTCGAACAAACCGAGCAACCACTTCAGGGTATTGGAAAGCAACAGGAAAGGATCGAACGGTGCTGGATCCGACCACGCAAGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTACAGGAACAGAGCTCCGAATGGCATCAAAACTGGGTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAGGACTGGGTGCTATGTAGAGTCTTCCACAAAAGCAAAGAAGAAAACAACAGTTCAAAAATGATGTACGAGTATGAAACAACACCTCAATCCCTAACCATGGCTTCGTCATCGCCCACCATGAACAGATTTTCCACCTCTTTCCCTTCCTCCATGCCATTGCCAAGCCACCACCACCATCATCATCACCATTTCAACGCAAACCAAAACTCTTCTTTCATGGATCTTCTTCACTTCTCTCGGGACACCAACACCAACAACACCATCGTTACTCAAATTACTTCCAAAGGTGATGATGGATATGGTTTCTTATGGGACATGGATTTGGAAGAAAATGGCCTACAAGATGCCGTGGCTTCAAACTTGGATGCTATAACCTTCGAGATCGATAATAATAATAATGAAAATAATATGGTGTTCCTATAG 861 0.4669 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENNSSKMMYEYETTPQSLTMASSSPTMNRFSTSFPSSMPLPSHHHHHHHHFNANQNSSFMDLLHFSRDTNTNNTIVTQITSKGDDGYGFLWDMDLEENGLQDAVASNLDAITFEIDNNNNENNMVFL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02124 286 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Viun1g02124 286 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 223 - -
Viun1g02124 286 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Viun1g02124 286 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Viun1g02124 286 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02124 Viun-Chr1 32489855 32495432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02124 6 159 NAC Transcription Factor Family AT1G56010 58.642 1.83e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g02124 NAM 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02124 - - gmx:100806284 457.603