Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02120 ATGGAAGAAGCAGGTTATGATTACCCCAAATTTCGGGAGAACGAAAATCTTTCGGTGCCCCCTGGTTTTGTATCACTCACATCTTTCATTTTGAGAAAGGGTGGAAATGTCAAGAAAAATGATAAATCTACAACCTTTCCATCTGCATCTGAACAAGAGCCAAACTGTATGAAGACTGAACTTGAGACGAATGACATTAATGCTTATAGGCAGGGTCTTATGCATCGGCCATGGATAAACATGGACCTGAGCAACAACCACAAGCCTGAGGAATCTCACACAAAGCATCTTCCTATGAACCTACCATTAAATCCTCTTCGTCCAAAGGGGACCATACGTGGATGTCCTAGTTGCAGTAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTAAGGATGCAATAAGAGAAGCTTTGGAAGAAGCTCCTATCTTTCGCCCAACAGAAGAGGAATTCAAAGATACGCTTAAATATATTGCAAGTGTACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTTCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAACACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACATCAAAAAATTATGGCCAGTGCTTGTGAAAATACAAAAAGCAAGAGAAAAAGAGATGTAAAAGTAGCTTTGGGCTCTCAGCTTTGTAAAAGAAACACTAGCACCCCAAATAACCATAATGTTGAAGAATGTGATTGTGAGTCCGAACCTGGTCCTAAATTCAGTCTCAAAACATTTAAGGAATATGCAGATGTGTTTAAGAACGAGTACTTCAATTACAATGATAAGAAGAAATCCATAGCTTCCAATGTAAAATTAGCTATTCCTCAGCAGTCGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGCCGAATTGTTCAAAATCCTTCCGAAGAAATTGAGGTGCTTTGTTGTAATAAGTTGGAGGCTGGAATATTTAGCAGTGGATTTCCTAAAGTTTCCGATTCTGTGGGGGCACACTCTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATGCTTTCAGGTTCCCTTCTTTCGTTTGAAAGCCCTGATGTTTCATGTAACCTTGCCCCCAATGTTAGTGTGGGAATGTGCTTCTCTGCTGTCAACTGGAAAGTTGAAGAACACCACTTATACTCATTATCGTACATACATCTGGGTGAACCAAAAGTGTGGTATAGCGTCCCAGGAAGATTTGCTGTCAACTTTGAAACAATTCGGAAAAAGTATCTACCAGATTTGCATGCAGGAAAGCATCATATGCATGACACTATGGAGAGGCAATTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGTGTTCAGTATCCTCGTGAATTTGTTCTCGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAATGTTGTAGAGCTTTATCGTGAACAGAGGAAAAAGACATTACTTTCATATGACAAGCTTTTATTAGGAGCTGCAAATGAAGCTGTCAGGGCCCAATGGGAAACTGGTCTGTGCATGAAGAGCACATCCTCCGACAGCTTGACATATAAAGGTGCCTATCAGAAAAATGAGTTCTTAACAAAAGCTTTCAACTCTCGCATTCAGAGTGAAAGTTTGAAGAGGAAATTTCTTACCAGTTCTTTAGTATCACAAAGGATGGATGAAAAATTTTATGCCACCTGTAGGAGGGAATGTAGTATTTGCCTGTGTGATTTATACTTGTCTGCTGTTGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTTGATCATGCAAAACATTTTTGTTCTTGCACTTGGAGCAACAAAATTCTCTTGTTCCGTTATGAAATCAGTGAGTTGAATGTTCTTCGTCAAGCCTTGGACGGGAAATTAAGTGCAGTCTTTAAATGGGCCAAAGAGTATCTCGGATTAACTTTGAACTCTGTGAGATCAAAACCACGCCCAGAAAATGTTTGTGGTTCAACTTTCCCTTCCCAAGACTTGCATATGAAAAAATCTATATCCCAGACAGCAGCAAATGAATCAATAGAGAAACGACGTCAATTGCAGGAAATATTGAATTCATCAAAAAGAAAACAAAATGAAGCGGTTTCACGTTTTTCCAAAAAGAAACAAAATGAAGTGGTTTCCCAGGTCCCGCAAACTTCTGGTGGCACTCATTCGAAAACGAAGACAGATTTGCTTCGGTCAAGCTGTGCAAGTGGTAAGAAAGGAATCAATTCTGTTGGCACCAAAATTGATACGGAGAAGGTTGGGAGCAAGGTAACAACTTCAAAGAAAGAAGATCCAAAAGCATCTAATGTTGCTCCGGTTACAAACTTAAGATATTTGTCTTTTCTACAAGAACATGAGTTACTTGATGTTTCATCTGATAGTATGAGTAGCTCTTCGTCATCGGATTCTGAAGCTGCATAA 2538 0.3987 MEEAGYDYPKFRENENLSVPPGFVSLTSFILRKGGNVKKNDKSTTFPSASEQEPNCMKTELETNDINAYRQGLMHRPWINMDLSNNHKPEESHTKHLPMNLPLNPLRPKGTIRGCPSCSNCVKVTARWHPKDAIREALEEAPIFRPTEEEFKDTLKYIASVRSKAETYGICRIVPPTCWKPPCFLQREHIWEKSEFVAQIQRIDGHQKIMASACENTKSKRKRDVKVALGSQLCKRNTSTPNNHNVEECDCESEPGPKFSLKTFKEYADVFKNEYFNYNDKKKSIASNVKLAIPQQSEPSVENIEGEYGRIVQNPSEEIEVLCCNKLEAGIFSSGFPKVSDSVGAHSYPEYLKSGWNLNNMLSGSLLSFESPDVSCNLAPNVSVGMCFSAVNWKVEEHHLYSLSYIHLGEPKVWYSVPGRFAVNFETIRKKYLPDLHAGKHHMHDTMERQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSEAVSFAPLEWLLHGQNVVELYREQRKKTLLSYDKLLLGAANEAVRAQWETGLCMKSTSSDSLTYKGAYQKNEFLTKAFNSRIQSESLKRKFLTSSLVSQRMDEKFYATCRRECSICLCDLYLSAVGCSCSNDKFACLDHAKHFCSCTWSNKILLFRYEISELNVLRQALDGKLSAVFKWAKEYLGLTLNSVRSKPRPENVCGSTFPSQDLHMKKSISQTAANESIEKRRQLQEILNSSKRKQNEAVSRFSKKKQNEVVSQVPQTSGGTHSKTKTDLLRSSCASGKKGINSVGTKIDTEKVGSKVTTSKKEDPKASNVAPVTNLRYLSFLQEHELLDVSSDSMSSSSSSDSEAA 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02120 845 Pfam jmjN domain 142 175 IPR003349 -
Viun1g02120 845 Gene3D Cupin 126 498 - -
Viun1g02120 845 Coils Coil 713 733 - -
Viun1g02120 845 ProSiteProfiles JmjN domain profile. 141 182 IPR003349 -
Viun1g02120 845 Pfam C5HC2 zinc finger 605 655 IPR004198 -
Viun1g02120 845 SMART JmjN_1 140 181 IPR003349 -
Viun1g02120 845 MobiDBLite consensus disorder prediction 744 779 - -
Viun1g02120 845 ProSiteProfiles JmjC domain profile. 350 514 IPR003347 -
Viun1g02120 845 MobiDBLite consensus disorder prediction 727 812 - -
Viun1g02120 845 SUPERFAMILY Clavaminate synthase-like 347 540 - -
Viun1g02120 845 SMART cupin_9 350 514 IPR003347 -
Viun1g02120 845 Pfam JmjC domain, hydroxylase 382 497 IPR003347 -
Viun1g02120 845 PANTHER LYSINE-SPECIFIC DEMETHYLASE 136 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02120 Viun-Chr1 32474109 32481136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02120 18 739 JUMONJI Transcription Factor Family AT1G08620 42.951 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun1g02120 JmjC 4.8e-30 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02120 K11446 - gmx:100804864 1203.35