Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02113 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCATGAAGAAGATCAAATTCTCATCAATTACATCAACATTTATGGCCATTCTAATTGGCGTGCTCTGCCCAAACTAGCTGGGCTGTTAAGGTGTGGAAAGAGTTGTAGACTCCGGTGGATAAATTATCTGAGACCAGACATCAAACGAGGTAACTTCACCCGAGAAGAAGAGGATGCTATAATCACTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATAGCAGCGAGATTACCTGGTAGAACAGACAACGAGATAAAAAACATGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAATTACCGACAAAGCCAAGAGCAAAAACGAAGCAAAAAACAACCAAAGTTGGATGGGGACGCTTCCGAAACCAATTACCAAGAACCCAAACTAGAACAACAACAAGAACCCGTGAATAACGTTCACGTTCACGTTCATGCATCGACCAAAGAAGATAATAGCACAGAGGATATGCCACTTTCTCCTCCCCAATGTTCTAGCGACATGTCTTCCCTCACAAATAGTGACAACAATAGCAGCAATAATAATAATAATAATTGTGACATGTCCTTGCATGTTAATGATATTGACACGCCGGAGAACGATCTTGCACTGGACGAGGATTTCTGGTCGGAGGTTTTGTTATCTGACTATAGTTCCGGTGAGACAAGTGGATATCCGAGCATTGATTATGGTCGGTTTGAACCATTGTCTAGCGAAGAAGTAGGGGTGCTTATAGATGGTAGTTCGTCGAGTATGAGCGATGGCATGGACTTTTGGTGTAACGTTTACGCCAGAGCTGAGGAATTCAACCAGTTACTTGAATTATGA 885 0.435 MGRAPCCEKMGLKRGPWTHEEDQILINYINIYGHSNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIITLHEMLGNRWSAIAARLPGRTDNEIKNMWHTHLKKRLPQNYRQSQEQKRSKKQPKLDGDASETNYQEPKLEQQQEPVNNVHVHVHASTKEDNSTEDMPLSPPQCSSDMSSLTNSDNNSSNNNNNNCDMSLHVNDIDTPENDLALDEDFWSEVLLSDYSSGETSGYPSIDYGRFEPLSSEEVGVLIDGSSSSMSDGMDFWCNVYARAEEFNQLLEL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02113 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun1g02113 294 CDD SANT 69 112 IPR001005 -
Viun1g02113 294 Gene3D - 11 67 - -
Viun1g02113 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun1g02113 294 CDD SANT 16 61 IPR001005 -
Viun1g02113 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun1g02113 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 231 - -
Viun1g02113 294 SMART sant 13 63 IPR001005 -
Viun1g02113 294 SMART sant 66 114 IPR001005 -
Viun1g02113 294 Gene3D - 68 140 - -
Viun1g02113 294 FunFam Transcription factor MYB15 68 140 - -
Viun1g02113 294 MobiDBLite consensus disorder prediction 118 143 - -
Viun1g02113 294 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Viun1g02113 294 FunFam MYB-related transcription factor 13 66 - -
Viun1g02113 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun1g02113 294 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun1g02113 294 MobiDBLite consensus disorder prediction 172 203 - -
Viun1g02113 294 MobiDBLite consensus disorder prediction 144 160 - -
Viun1g02113 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun1g02113 294 MobiDBLite consensus disorder prediction 111 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02113 Viun-Chr1 32418339 32420369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02113 1 294 MYB Transcription Factor Family AT2G31180 47.138 1.35e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g02113 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02113 K09422 - gmx:100775603 422.165