Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02101 ATGGATTTGGCTTTGGATTTAGATTTTGATTATCATCTTTTTCCAAACGAAAATCTTAACTTCTTCGAAAACGCTGGAGACCCTTTTTCCTGGGACTACAATTTTGACGACATCTTCAACTTCAGCGACGACCAAACCAAGGAATCATCTTCGGCGTCCAACGTTTCCGGTTCTGTGGGCAGCGTCGAGTTACAAGAAGTATCGTCCAACAACACAACCTACGAAGAAGTAGCGAAAGAAACAGAGGCAGTGGCGGCGCCGGCGCCGGCCAAGGAGGGTAGGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAGTTCGCGGCCGAGATAAGGGATTCGACTCGAAACGGCGTTCGGGTGTGGATTGGAACGTTCGACACGGCGGAAGCGGCGGCTCTGGCTTACGACCAGGCGGCGTTCTCTACGAGGGGGTCTTTGGCGGTGCTGAATTTCCCGGAGGAAGTGGTGAGAGAGTCCCTGAAAGACATGCCGAGTAAGCCTTGGGAGGAAGGTTCTTCCCCTGTTTTGGCCCTCAAGAGAAAACACACTATGAGGAGAAAGTCCGGTTCCAAGAAGAAGAAAAGCAAAAGCGATAACAGGGAACAGTTGGAATTCTGCACCACTTCCAAGAATGTGCTCGTGTTCGAGGATTTGGGTGCTGATTATCTAGAACAGCTTTTGAGTTTGACTTATTAG 699 0.5036 MDLALDLDFDYHLFPNENLNFFENAGDPFSWDYNFDDIFNFSDDQTKESSSASNVSGSVGSVELQEVSSNNTTYEEVAKETEAVAAPAPAKEGRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRRKSGSKKKKSKSDNREQLEFCTTSKNVLVFEDLGADYLEQLLSLTY 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02101 232 MobiDBLite consensus disorder prediction 182 202 - -
Viun1g02101 232 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Viun1g02101 232 FunFam Ethylene-responsive transcription factor 2 94 154 - -
Viun1g02101 232 MobiDBLite consensus disorder prediction 50 72 - -
Viun1g02101 232 CDD AP2 96 154 IPR001471 GO:0003700|GO:0006355
Viun1g02101 232 Gene3D AP2/ERF domain 95 155 IPR036955 GO:0003700|GO:0006355
Viun1g02101 232 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Viun1g02101 232 SUPERFAMILY DNA-binding domain 95 154 IPR016177 GO:0003677
Viun1g02101 232 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Viun1g02101 232 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Viun1g02101 232 PANTHER DNA-BINDING DOMAIN 56 228 IPR044808 GO:0003700|GO:0009873
Viun1g02101 232 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02101 Viun-Chr1 32353074 32354057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02101 92 228 AP2-EREBP Transcription Factor Family AT2G31230 56.962 1.05e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g02101 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02101 K14516 - gmx:100779524 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02101 1 32353074 32354057 Viun1g02101 1 32353074 32354057 ECH
Viun1g02101 1 32353074 32354057 Viun7g01394 7 17589359 17590416 PCT