Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02100 ATGGAGGGAGGGAGAGGAGTTGTGAGCGGAAACGCAGAGGTTAGGTACAGAGGGATTCGTAAGAGGCCATGGGGAAAGTTTGCAGCAGAGATTCGTGACCCTACGAGAAAAGGTGCTAGAATATGGCTTGGAACGTTTGACACTGCTGAAGAAGCTGCACGTGCTTACGATGCTGCTGCTTTTCGTTTTCGGGGTCACAAGGCCATACTCAACTTCCCTAACGAGTATGGCCACACCACTCCTAATAATCCTAACATCTTTTCAACTTCACAAACTCTTCATTCTTTCTCTGGTGGCGAGGGTTCTTCGCAGCAACACCGAAATGGTGCTGCAACTTTTGAATTGGAGTACTTGGACAATAAGTTGTTGGAAGAACTCCTTGAGGCGCCTGATGGAACAGGCAACGACACCAATTGA 417 0.482 MEGGRGVVSGNAEVRYRGIRKRPWGKFAAEIRDPTRKGARIWLGTFDTAEEAARAYDAAAFRFRGHKAILNFPNEYGHTTPNNPNIFSTSQTLHSFSGGEGSSQQHRNGAATFELEYLDNKLLEELLEAPDGTGNDTN 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02100 138 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Viun1g02100 138 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Viun1g02100 138 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
Viun1g02100 138 PANTHER DNA-BINDING DOMAIN 14 126 IPR044808 GO:0003700|GO:0009873
Viun1g02100 138 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Viun1g02100 138 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Viun1g02100 138 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Viun1g02100 138 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Viun1g02100 138 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Viun1g02100 138 MobiDBLite consensus disorder prediction 81 108 - -
Viun1g02100 138 FunFam Ethylene-responsive transcription factor 2 14 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02100 Viun-Chr1 32337991 32338657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02100 11 129 AP2-EREBP Transcription Factor Family AT3G23230 58.197 3.03e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun1g02100 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02100 - - gmx:100778998 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02100 1 32337991 32338657 Viun1g02100 1 32337991 32338657 ECH
Viun1g02100 1 32337991 32338657 Viun7g01393 7 17542427 17543299 PCT