Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02099 ATGGCTTCCCCTTTGTTTCAGCATTCAGACTGGGGCACGTTGATGGAGCCTTGTGATATTTTGTTTGAACCATTTTCAAGCAAAGATATTTGTTGTGACCCTTTTCATGACTCTCTTTCCTTTGATATGATTGAGAAGTCAAAGGATTCAGAGGAAGCAAGTGAAGTGATTGAAGCTGCGGAAGTGGTGCAAAGTAAGAAGTGTTATATTGGGGTAAGGAAAAGACCGTGGGGAAGATTTGCAGCGGAGATCAGAGACGCGACGAGGAAGGGTACCAGAGTTTGGCTTGGAACGTTTTCAAATGCAGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATTTCTGATGAGAGGATCAACTGCACTGCTCAATTTTCCTGTCAAAAGGGTTATGGAGTCTTTACATGACCTCAATTACTTTGGTTGCAACCAAGGCTGCTCTCCCGCATTGGAACTCAAAAAGAGGCACAACATGAGACGAAAATTATCGTCAAAGGCTAAGGAAACTAAAACCAAACTGGAATTCCAATAA 531 0.4275 MASPLFQHSDWGTLMEPCDILFEPFSSKDICCDPFHDSLSFDMIEKSKDSEEASEVIEAAEVVQSKKCYIGVRKRPWGRFAAEIRDATRKGTRVWLGTFSNAEEAALAYDQAAFLMRGSTALLNFPVKRVMESLHDLNYFGCNQGCSPALELKKRHNMRRKLSSKAKETKTKLEFQ 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02099 176 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Viun1g02099 176 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Viun1g02099 176 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
Viun1g02099 176 FunFam Ethylene-responsive transcription factor 2 67 128 - -
Viun1g02099 176 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Viun1g02099 176 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Viun1g02099 176 PANTHER DNA-BINDING DOMAIN 49 153 IPR044808 GO:0003700|GO:0009873
Viun1g02099 176 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Viun1g02099 176 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Viun1g02099 176 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02099 Viun-Chr1 32319361 32320021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02099 34 165 AP2-EREBP Transcription Factor Family AT3G23240 52.113 1.79e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g02099 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02099 K14516 - gmx:100800600 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02099 1 32319361 32320021 Viun6g01685 6 24499173 24499908 ECH
Viun1g02099 1 32319361 32320021 Viun7g02558 7 29455439 29456528 ECH
Viun1g02099 1 32319361 32320021 Viun1g02099 1 32319361 32320021 ECH
Viun1g02099 1 32319361 32320021 Viun7g01389 7 17337987 17338616 PCT