Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02098 ATGGATTTCAATTCTTCGTTCTCCCATCTCAACTCTTGGGAAGCGTTGTTTTCGTTCAACGACAATGCAACAAATGAATCGTCCATATTGGACTCCATAGCTATAGGATCAACGAAGAAAGAGAAGAGAGGGTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTATGGATTGGAACATTTGACAGTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGGAGCTTTCTTGACAAGGGGTGGTCTTGCTACCCTTAACTTTTCAGCACAAGTGGTGGTGGAGTCCCTGGAAGACATGGGTTTCAAGGCACTCAGAAATGGTGTCTCACCATTGTTGGAACTCAAAAGGATGCACGTGATGAGAACCAAATCTAGGGCTAGCAGGAGTTGTGGTAAAAAGGTTAAAAGGGGTTGCGGCAAAGGGAAATTGGATCCTACTACTGAAACAGTGTTGGTGTTGGAGGATTTGGGTCCTGAATACCTAGAGCAACTTTTGACCTTCACTTCCCCTGGTTCTTGGTGCTGA 567 0.4497 MDFNSSFSHLNSWEALFSFNDNATNESSILDSIAIGSTKKEKRGYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDSAEEAALAYDQGAFLTRGGLATLNFSAQVVVESLEDMGFKALRNGVSPLLELKRMHVMRTKSRASRSCGKKVKRGCGKGKLDPTTETVLVLEDLGPEYLEQLLTFTSPGSWC 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02098 188 PANTHER DNA-BINDING DOMAIN 37 179 IPR044808 GO:0003700|GO:0009873
Viun1g02098 188 FunFam Ethylene-responsive transcription factor 2 43 103 - -
Viun1g02098 188 Pfam AP2 domain 44 87 IPR001471 GO:0003700|GO:0006355
Viun1g02098 188 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Viun1g02098 188 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Viun1g02098 188 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Viun1g02098 188 ProSiteProfiles AP2/ERF domain profile. 44 102 IPR001471 GO:0003700|GO:0006355
Viun1g02098 188 Gene3D AP2/ERF domain 44 104 IPR036955 GO:0003700|GO:0006355
Viun1g02098 188 SMART rav1_2 44 108 IPR001471 GO:0003700|GO:0006355
Viun1g02098 188 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02098 Viun-Chr1 32314030 32314781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02098 37 187 AP2-EREBP Transcription Factor Family AT3G23240 54.194 8.87e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g02098 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02098 K14516 - gmx:100818907 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02098 1 32314030 32314781 Viun1g02098 1 32314030 32314781 ECH
Viun1g02098 1 32314030 32314781 Viun7g00116 7 740275 741022 PCT
Viun7g01394 7 17589359 17590416 Viun1g02098 1 32314030 32314781 PCT