Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02097 ATGGAGGAGTTAAAGGAAAAAGTGAGTGAAGGGGAAGAAAAGGAAAAAAAGTACAGAGGAGTAAGAAGAAGGCCATGGGGAAAGTTTGCATCAGAGATAAGAGATTCAGCTAGAAATGGAGCTCGCGTGTGGCTTGGGACCTTTGACACTGCTGAGGAAGCAGCAAGAGCTTATGATCGTGCTGCATTTCAAATGAGAGGTGCCATGGCCATTCTCAACTTCCCACATGAACACCCTTCTTGCACTTCATCGTCAAAAACTGAACATGCTAAACAAGTTGTGGTTTTTGAGTGTCTCGATGACAAATTGTTGGAGGAACTCCTTGATTGTGATCACAAAAACATCAATCACAACTTGGGTAACTAG 366 0.4317 MEELKEKVSEGEEKEKKYRGVRRRPWGKFASEIRDSARNGARVWLGTFDTAEEAARAYDRAAFQMRGAMAILNFPHEHPSCTSSSKTEHAKQVVVFECLDDKLLEELLDCDHKNINHNLGN 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02097 121 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Viun1g02097 121 Coils Coil 1 21 - -
Viun1g02097 121 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Viun1g02097 121 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Viun1g02097 121 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Viun1g02097 121 FunFam Ethylene-responsive transcription factor 2 16 76 - -
Viun1g02097 121 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Viun1g02097 121 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Viun1g02097 121 SUPERFAMILY DNA-binding domain 17 77 IPR016177 GO:0003677
Viun1g02097 121 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Viun1g02097 121 PANTHER DNA-BINDING DOMAIN 11 87 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02097 Viun-Chr1 32308650 32309333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02097 12 113 AP2-EREBP Transcription Factor Family AT3G23230 52.419 2.17e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g02097 AP2 3.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02097 - - pvu:PHAVU_001G160100g 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02097 1 32308650 32309333 Viun1g02097 1 32308650 32309333 ECH
Viun7g01388 7 17329038 17329802 Viun1g02097 1 32308650 32309333 PCT