Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02096 ATGGCACTCAACCACAACAAGCTGCTTCCACCCATCAAAACTCATGCTAGCACAATCCTTCACACACCAAAACCTGCTTCAAATTCTGCTTCTGCTTTACCCATACTTGCCATCATTGTTCCCACCATCTTTGTCACTGGTTTTATACTCATCACCTACTTAAATCTCGTCACCAAATGCTTCTCAAACTTGTACCTATTTCACCCCTTGAGATGGTTTTTCTCCCTCCTTACCCCTCAACATGAAGATCAAGATCCCTTCATAGCACTCTCTCCGAGGATGTGGAGCCAAGGACTTGATGAATCTACAATCAGTGAAATCCCAACACTTCAATTCACAAAAGGGGATGTCGAAAAGAACCAAAGTGTGTGTGGCTGCGTGGTTTGTTTGACTGAGTTTCAAGATCATGATATGCTGAAAGTTCTTCCCATTTGCAAACATGCCTTTCACTTTCACTGCATCGACGTTTGGCTTCAAACCAATGCCAATTGCCCTCTTTGTAGATCAAGCATTGTTTCAGGCAACACACAGTGCCCGATGGATCATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTGCTCTCTCACGTGAGCAGTGATGAGGATTTTGTTGTCATTGAAGTTGGGGAGATGCAGCAAGAAAGAAGTGACTCAAGCGAAAGAGTTGTAGAGAGTAGAAATGAGTGTATCATAAGGAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGCATTGATGTTAGGAAGAAAGATGAGCGGTTTTGTATTCAGCCTATTCGAAGATCTTTCTCAATGGATTCAGCAAACGATAGGCAAGTTTGCTTGGATTTTCAGACCACCATGCAACAGAATAATAGGCCTCTAAATCAGGCTAGTGACAGTGAAGATTGCAATAGCAGAGATGGAATATCACTCTTTCCATTCCGTTAA 936 0.4274 MALNHNKLLPPIKTHASTILHTPKPASNSASALPILAIIVPTIFVTGFILITYLNLVTKCFSNLYLFHPLRWFFSLLTPQHEDQDPFIALSPRMWSQGLDESTISEIPTLQFTKGDVEKNQSVCGCVVCLTEFQDHDMLKVLPICKHAFHFHCIDVWLQTNANCPLCRSSIVSGNTQCPMDHIIAPSSSPQDSQLLSHVSSDEDFVVIEVGEMQQERSDSSERVVESRNECIIRKCHHVSIMGDECIDVRKKDERFCIQPIRRSFSMDSANDRQVCLDFQTTMQQNNRPLNQASDSEDCNSRDGISLFPFR 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02096 311 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Viun1g02096 311 PANTHER RING-H2 FINGER PROTEIN ATL16 11 311 IPR044600 GO:0016567|GO:0016740
Viun1g02096 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 174 IPR013083 -
Viun1g02096 311 Pfam Ring finger domain 126 168 IPR001841 -
Viun1g02096 311 SUPERFAMILY RING/U-box 104 174 - -
Viun1g02096 311 SMART ring_2 126 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02096 Viun-Chr1 32304277 32305212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02096 26 290 C3H Transcription Factor Family AT1G04360 39.159 1.08e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02096 K19041 - gmx:100809883 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02096 1 32304277 32305212 Viun1g02096 1 32304277 32305212 ECH
Viun1g02096 1 32304277 32305212 Viun7g00120 7 784000 785981 PCT
Viun7g01387 7 17282471 17284160 Viun1g02096 1 32304277 32305212 PCT