Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02087 ATGATGATAAATGATTATGATTTGCACAAGGTTGAAGAGACCCAGAAAACAACCAAAAATCCTAAAAGACCACAAACCCCTCAACCAGAAAATTCCAACATGACTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAGTGTGTGAGAGGTTGTGTTTTTGCTCCTTACTTTTGCCATGAACAGGGTGCCACTCATTTTGCAGCCATTCATAAGGTTTTTGGAGCAAGTAATGTTTCAAAGCTCCTTGCTCACCTTCCTGTGAGTGACCGTTGTGAAGCTGCTGTCACCATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAATTTACAAGCACAAGTGGCTCATCTCAGGGAACAGGCTGGTCAGATCTATCTGAATGCCTCTGCAACTGAAAACCCTAATGAGAAATACTATGGAAAATCCACAAATTTTCCCCAATATCTTCAGAGTTGGTTCCAGACGGAGAATTCCAACTCGGCTTCACAGTTTCTTCCTAAATTGTCCACTGATACTTCAACACAGTACTATGGAAATACTAATACCTTCATGGACCTAAACCCTATCGGAAATGATGACAATTCCGTAACAGTAGAGGAAAGCATCTCCTTTTCCAGCTTTGAAGAGAGTTGTAACTCTTCCATGGCCTGTGACATGCAAAGGGAGTGGAGCTTTTATCAGTTGGATAACCTTCAGTAA 753 0.417 MMINDYDLHKVEETQKTTKNPKRPQTPQPENSNMTGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQVAHLREQAGQIYLNASATENPNEKYYGKSTNFPQYLQSWFQTENSNSASQFLPKLSTDTSTQYYGNTNTFMDLNPIGNDDNSVTVEESISFSSFEESCNSSMACDMQREWSFYQLDNLQ 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02087 250 MobiDBLite consensus disorder prediction 1 36 - -
Viun1g02087 250 ProSiteProfiles LOB domain profile. 37 139 IPR004883 -
Viun1g02087 250 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Viun1g02087 250 Coils Coil 118 138 - -
Viun1g02087 250 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 216 - -
Viun1g02087 250 MobiDBLite consensus disorder prediction 20 36 - -
Viun1g02087 250 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02087 Viun-Chr1 32230241 32231369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02087 38 164 AS2 family AT3G58190 76.744 2.14e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun1g02087 LOB 1.5e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02087 1 32230241 32231369 Viun1g02087 1 32230241 32231369 ECH
Viun1g02087 1 32230241 32231369 Viun7g01372 7 16891872 16892938 PCT