Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02086 ATGGCTTCTGCAAGTGGAAATGGTGGCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGGCGAAAGTGTGCAGCTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTTGCTGCCATACATAAAGTGTTTGGTGCCAGCAATGTTTCCAAGCTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCTGTTGTCACAATTGCTTATGAAGCTCAGGCTCGTATCAGAGACCCCGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGATGGAGAATAATAATCAGCAGTGGGGAGGGAATCAAAGTGTTGCAGGAGAAGCAATGAACCATCATCCATTTTGTCCCACTTACATGAACCCTATTTCTCCTCAAAGCTCTCTTGAGTCAATCGATCACAGCAGCATGAATGATGGAATGAGCATGCAAGATATACAAAGCAGAGACAAGAACAATGAGTTGGGTGAGCTGCAAGAACTGGCTCTCAGAATGATGAGGAACTGA 597 0.469 MASASGNGGSNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMENNNQQWGGNQSVAGEAMNHHPFCPTYMNPISPQSSLESIDHSSMNDGMSMQDIQSRDKNNELGELQELALRMMRN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02086 198 Coils Coil 96 116 - -
Viun1g02086 198 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 168 - -
Viun1g02086 198 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Viun1g02086 198 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02086 Viun-Chr1 32218668 32220260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02086 3 198 AS2 family AT2G42430 54.065 3.47e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun1g02086 LOB 6.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02086 K13944 - gmx:100801508 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02086 1 32218668 32220260 Viun1g02086 1 32218668 32220260 ECH
Viun1g02086 1 32218668 32220260 Viun7g01371 7 16769933 16771171 PCT