Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02078 ATGGAAGGAAACTATCTCACCAGAAACACGGATAAAGGGGATAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCGAGAAACTATGCTTGTAGCTTTTGTAAAAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGGTTGAGATCTTCCTTACCCTCATCATCATGGCTTTCTGAGTGTCCTAAACCTAACCCTAGCATTATGCCAAACTCCACTCATCTTTCACCCTCTTCTCCATCGTCGTGTCTATCTAACACCGACCTTTTGAATTGTGCTCATTGTTCTCCACTTTATAGCCCTTCTTTGACTTTGTCGTTTTCACTGACCCCTCCGGTTTCTCTCAATGGAGACAAGAAACCAACACTCGCATCTTCCCAGTTTCTTCCTCTCTCGGTTCCTCGGGAAAGTGAGGAAATTAAGATTTGTAAGAACAAAGAGATTGGTTTGGGAGTCGAAGAAGTACAAGGTTGTGCAATGGGGGAGGAATGCAAGGTTTGTAAGAGTAATGAGCATAGCATCAAGCTGGAGTTGGGAATAGGGTTTCTTAAACAACCAGAGAAGTTGGATTTGGAATTACGATTGGGGCACTAA 633 0.4455 MEGNYLTRNTDKGDRFGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSSWLSECPKPNPSIMPNSTHLSPSSPSSCLSNTDLLNCAHCSPLYSPSLTLSFSLTPPVSLNGDKKPTLASSQFLPLSVPRESEEIKICKNKEIGLGVEEVQGCAMGEECKVCKSNEHSIKLELGIGFLKQPEKLDLELRLGH 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02078 210 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Viun1g02078 210 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Viun1g02078 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Viun1g02078 210 SMART c2h2final6 32 54 IPR013087 -
Viun1g02078 210 Pfam C2H2-type zinc finger 32 56 - -
Viun1g02078 210 PANTHER OS07G0101800 PROTEIN 18 210 - -
Viun1g02078 210 Gene3D Classic Zinc Finger 21 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02078 Viun-Chr1 32155070 32156611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02078 19 209 C2H2 Transcription Factor Family AT3G23130 38.776 1.21e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02078 zf-C2H2_6 6.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02078 - - gmx:102660083 247.669