Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02067 ATGCCGAATCAGGTGGCGAAGGTCCGGAGGGACACGATTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAGATTACGGAGGAGGAATTGGAAAGTTGTCCAATATGCCACATTGATTTGGGTTGTGTTCCACTGGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCGTGAAGGGAAGAAAGGTGAAGGCACCTGAAGTTGTGACCTCAACACCAATACCAGCTAGGAGAAAGGAGAGGTCTCTTTCGTCTTTGGTGGTCAACACTCCAAGGGTATCTACACAGGCAACAATGACAGGAAGAAGAACAAAACCTTCAAGAAAAGCTAGTGGTCTGCGGTCCTCTAGTTTTTCCTTTGAAAAGCCCATTAAGAAAGAGGAAGAATTGCTGGAAGATCATCTTGAGAGTTCAAGCTCACCTGAACATTCAAATAAGTTTGCTCAGAATTCCGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAAACTGCACCCAATAAAGGATCAGAGAATGGTGGCGAAGCATATGATGCAAAATTGGATCTTTGGAAGCCTTTGAACTGTTTAGTAGAGGTGGCAAGTAGGAGTAAATCTTTCAAGTCTCATGTGCAAGGGTCTGATGCTAAATTAGAAACCACTCAAGTAAGTGAGAGTGAGTCTCAGATGCAGAAAACTAAAATTAAGGACAAACGCAAAGGAAAAGTTGAGGAAGAAAAGATCATCCCTCATCCTGCTACTTCAGATGCAACAAAACCCAATAAATTGCGCAGAATGCGCAAGAAGAAGGAGCCTGCTTCTGGAGAATCAAGCATATCACCCCAAGCTGTGCTTGATTCTGCAAGCAGTAAAAGACTCTCTAGGACTGGTCCAATCTGGTTCTCCTTGGTAGCTGCAGAAAACCAGGGAGATGCACCCTTGCCACAAATTCCTTCAAGCTATGTGAGAATCAAGGATGGTAGCGTACCAGTCTCATTCATCCAAAAATACCTAATGAAGAAACTGGACTTGACTAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAATCAGTGCTCCCTACATTGAGTCTATATAATTTGGTTGAGCTGTGGTTGGATACAGCATCCACGTCACAGAGAATTTCAGCAACTATTGGTTCCTCAGCAAAGGATTTTGTCATGGTACTGTCTTATGCTCGGAAGGTTCCACACCCATGA 1284 0.4416 MPNQVAKVRRDTIVACMTCPLCNKLFREATTISECLHTFCRKCIYDKITEEELESCPICHIDLGCVPLEKLRPDHSLQDVRAKVFPVKGRKVKAPEVVTSTPIPARRKERSLSSLVVNTPRVSTQATMTGRRTKPSRKASGLRSSSFSFEKPIKKEEELLEDHLESSSSPEHSNKFAQNSGQSMSPCEGSQTAPNKGSENGGEAYDAKLDLWKPLNCLVEVASRSKSFKSHVQGSDAKLETTQVSESESQMQKTKIKDKRKGKVEEEKIIPHPATSDATKPNKLRRMRKKKEPASGESSISPQAVLDSASSKRLSRTGPIWFSLVAAENQGDAPLPQIPSSYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQSVLPTLSLYNLVELWLDTASTSQRISATIGSSAKDFVMVLSYARKVPHP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02067 427 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Viun1g02067 427 MobiDBLite consensus disorder prediction 251 273 - -
Viun1g02067 427 MobiDBLite consensus disorder prediction 100 147 - -
Viun1g02067 427 SUPERFAMILY RING/U-box 13 83 - -
Viun1g02067 427 MobiDBLite consensus disorder prediction 112 147 - -
Viun1g02067 427 MobiDBLite consensus disorder prediction 227 250 - -
Viun1g02067 427 MobiDBLite consensus disorder prediction 159 202 - -
Viun1g02067 427 MobiDBLite consensus disorder prediction 296 310 - -
Viun1g02067 427 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Viun1g02067 427 MobiDBLite consensus disorder prediction 170 198 - -
Viun1g02067 427 CDD RING-HC_PCGF 17 60 - -
Viun1g02067 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 114 IPR013083 -
Viun1g02067 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 423 IPR044807 GO:0004842
Viun1g02067 427 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Viun1g02067 427 MobiDBLite consensus disorder prediction 227 310 - -
Viun1g02067 427 Gene3D - 301 399 - -
Viun1g02067 427 SMART ring_2 19 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02067 Viun-Chr1 31983370 31990050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02067 3 346 C3H Transcription Factor Family AT2G30580 54.179 4.31e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02067 K16277 - gmx:100793731 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02067 1 31983370 31990050 Viun1g02067 1 31983370 31990050 ECH