Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02046 ATGGGTCTGGAAAAGAATCTTCGTGTATTTTTTGATGTGTCAATTGATGCGGACCCCGTGGAAAGAATTGTTATTCAGCTTTTTGATAATATTGTTCCAAAGACAGCCGAGAATTTTCGGGCGCTCTGTACAGGTGAGAAGGGCATTGGAGAATCAACTGGGAAACCTTTGCATTATAAGGGAACAAGCTTTCATCGTATAATTAGAGGTTTCATGGCTCAAGGTGGTGATTTTTCAAGGGGTAATGGCACCGGTGGGGAAAGTATATATGGTGGAAAATTTGCAGATGAAAATTTCAAACTAAGACATGATGGACCTGGTTTTCTTTCTATGGCTAATAGTGGTCCTAATACAAATGGATCTCAGTTTTTTATTACATTCAAGCGCCAACCACATCTTGATGGGAAACATGTTGTTTTTGGAAAAGTTGTCAATGGATTGGATGTTCTGAAGAAAATTGAGCTGGCAGGAACATCTGACGGTAAACCTACCCAGACAGTTAAAATTGTTGATTGCGGTGAAGTTCCTGCAACTGAAACAAAAACTCAGCATACTGTTGAGAAGGAAAAAGGGAAAAGGAGAAAATCAGGGAAAACCCTTACTTCTGATGATAGTTCCGAGTCTTCTGACAAAAAGTCAAGGGGGAAAAGAAAAAAATCTTCCAAAGACACGAGGAAAAAAAGGAAAAGATACTCAACATCTGATAGTGATAGTTATTCCTCAGATTCTGAGTCAGATTCAGCTTCTGATTCTGAATCAGATTCATCTGATTCTGATTCTAGTTCTTCTAGTTATGGGAAACACCAGAAGAGGAAAAATAAGCGCAGGCATGGGAAGAAGAGGAAATTTGGACGAAAGCAGAGCAAGAGAAGCAGGCACAGTCGAAGTAGAAGATCAAAGCACAAATCTTGGCGATGA 918 0.3965 MGLEKNLRVFFDVSIDADPVERIVIQLFDNIVPKTAENFRALCTGEKGIGESTGKPLHYKGTSFHRIIRGFMAQGGDFSRGNGTGGESIYGGKFADENFKLRHDGPGFLSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVVNGLDVLKKIELAGTSDGKPTQTVKIVDCGEVPATETKTQHTVEKEKGKRRKSGKTLTSDDSSESSDKKSRGKRKKSSKDTRKKRKRYSTSDSDSYSSDSESDSASDSESDSSDSDSSSSSYGKHQKRKNKRRHGKKRKFGRKQSKRSRHSRSRRSKHKSWR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02046 305 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 8 175 - -
Viun1g02046 305 MobiDBLite consensus disorder prediction 181 214 - -
Viun1g02046 305 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Viun1g02046 305 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
Viun1g02046 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Viun1g02046 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Viun1g02046 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Viun1g02046 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Viun1g02046 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Viun1g02046 305 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 173 IPR002130 GO:0000413|GO:0003755
Viun1g02046 305 SUPERFAMILY Cyclophilin-like 6 175 IPR029000 -
Viun1g02046 305 CDD cyclophilin_ABH_like 8 173 - -
Viun1g02046 305 MobiDBLite consensus disorder prediction 267 305 - -
Viun1g02046 305 Gene3D - 2 183 IPR029000 -
Viun1g02046 305 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Viun1g02046 305 MobiDBLite consensus disorder prediction 180 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02046 Viun-Chr1 31811119 31815039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02046 25 171 U-box Gene Family AT5G67530 48.322 1.18e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02046 K09566 - gmx:100807327 367.851