Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02038 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCCGAGGATGCCAGTGTTTCTTCTGGTACAAAAGTTCAGGACCTGGGAGGACTCACTCACGCCCTTTCTAACATTTCTCCTCAACAACCACCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCTACTAATAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTCCACAGGAGGGGCCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAGTAAAGAGGTAAAAAAGAAAGCTTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCCAGGGCCCTGGGGGATCTTACAGGAATCAAGAAACACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCCAGGAAGGACAGTTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAATTAGCAGTAGCACCCACCACCACGACAAACCCATTCCAATCCCTCTTTCTTTTCCAAACCCAACAACAGAACTTCCAAAACCACCATATGACCAGCTTCAACCAATGGGACAGTTCTCAAGAAAACCCTAACCCTAGCAACATTGCCACTTCCCTCCAAATCAAACCAGAATCTCAAACTTTCCACAACCCCACTCTCTCTTCACTTCTCCAACACCAAGAGCAGCAACACCCCAACAAGGGCATGATAGCCTCACCCTTCGGGAACCTCCACGTGCCCTCACAAGCCTCCAGCTCTGCCACGTCAGCATACATGTCAGCCACTGCGCTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATGACGGGCCCAGGCCCTGCTGCTGTTGGGCCTCGGAGCGCAATGGGTCACGTGACTCAGCTCGGCGCGGGCGAGTTCGGAACAGCGAACCAACTCGACCCGGTGGTGGTGCCGGATAGCTACATGAGAGGGTTCCCCGGTCGTAGCCTCAAGAGTGACCGTCTCACTAGGGACTTCCTGGGACTCACGGCAGAAGCTAACGGCGGAGTTGACGGCGCCGCGGTTGACGTTAGCAGGAACGTGAAGGATATGCTGACGTTCGCAGGAGGTGTAGAGTACCACCAACCGCTCCGTCAGCATCACCACCACGCGCTTCTCAAGCCCCAACAAGGCTTCGGTTTCCTTGAGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTGA 1389 0.514 MFPTAISNSTSLSEDASVSSGTKVQDLGGLTHALSNISPQQPPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAVAPTTTTNPFQSLFLFQTQQQNFQNHHMTSFNQWDSSQENPNPSNIATSLQIKPESQTFHNPTLSSLLQHQEQQHPNKGMIASPFGNLHVPSQASSSATSAYMSATALLQKAATVGAAAMTGPGPAAVGPRSAMGHVTQLGAGEFGTANQLDPVVVPDSYMRGFPGRSLKSDRLTRDFLGLTAEANGGVDGAAVDVSRNVKDMLTFAGGVEYHQPLRQHHHHALLKPQQGFGFLETTTAPETWGNC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02038 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Viun1g02038 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 410 IPR031140 -
Viun1g02038 462 MobiDBLite consensus disorder prediction 1 59 - -
Viun1g02038 462 FunFam protein indeterminate-domain 12-like 55 123 - -
Viun1g02038 462 MobiDBLite consensus disorder prediction 1 45 - -
Viun1g02038 462 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Viun1g02038 462 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Viun1g02038 462 Gene3D Classic Zinc Finger 145 210 - -
Viun1g02038 462 SMART c2h2final6 76 98 IPR013087 -
Viun1g02038 462 SMART c2h2final6 152 172 IPR013087 -
Viun1g02038 462 SMART c2h2final6 117 147 IPR013087 -
Viun1g02038 462 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Viun1g02038 462 Gene3D Classic Zinc Finger 55 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02038 Viun-Chr1 31744399 31748446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02038 15 449 IDZ Gene Family AT4G02670 49.778 2.02e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02038 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02038 K25870 - gmx:100788975 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02038 1 31744399 31748446 Viun7g02085 7 25638466 25642351 PCT
Viun7g01509 7 19575072 19579311 Viun1g02038 1 31744399 31748446 PCT