Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02037 ATGAACTATTTGTACCCTGTGAAAGAAGAGTACTTTGAATCGCCACCACCATCCTCCTCATCGTCGCCAACGTCTCAAACAGGCGGTGATGAGTCAGCAGTGGTTTCTCTTCCGAGGCCAATGGAGGGGCTTCACGAAGTAGGGCCACCCCCATTTCTGACCAAGACTTATGATGCGGTGGAGGACCCTACCACCAGCCACATAGTTTCATGGAGCAGAGGTGGTGCCAGCTTTGTGGTTTGGGATCCTCACGCTTTCTCCAGAGACCTTCTCCCTCGATACTTCAAGCATAACAATTTCTCCAGCTTTGTACGGCAACTAAACACTTACGGTTTTAGAAAAATTGATCCCGATAGGTGGGAGTTTGCGAACGAAGGATTCCTGAGAGGGCACAGGCAGCTTTTGGCAAACATAAGGAGAAGAAAGCAACCTTCTCAGCCTTCTAGTTCTCAACAAGGGCAAGGTCACTGTGTTGAAGTGGGTCGTTTTGGACTGGATGAAGAGGTTGATCGTTTAAAGCGTGACAAGCAGGTGTTGATGATGGAGCTGGTGAAGCTGAGACAGCAGCAGCAGAATACGAGGTCGTACCTTGAGGAAATGGAGGAGAGGCTACGAGGGACAGAAATTAAGCAGCAGCAGATGATGTCTTTCTTGGCTAGAGCTTTGAAGAACCCCACCTTCATCCAGCAGCTGCTCCAGCAGAAAGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCAAAGAAGAGGAGAAGACCAATCGAGCAAGGGCCAAGTGGGGTTGGAGAATCAAGCATCGGAATAAGGGGAGGGAGAAACAGCGTTAAAGTGGAGTCCCATGTGTTTGGGGAATATGGATTTGGAGTGTCAGAGTTGGAAGTGCTGGCTTTGGAGATGCAAGGTTATGGTAGGGGAAAGAGGGAACAAGAGGAAGAGCCCGAGGCACTAGAATCACAGGAGAGGTTGGAGAAAGAGCTGGATGAAGGTTTCTGGGAAGAACTTTTCAGTGAGGGTTTTGAGGGTGAATTAGATATTCCAACTTCACAAGACCCAGATGACGAAGAAGATGTGAATGTGTTAGCCAATCGCTTTGGTTACTTAGGGTCAAGTCCTAAATGA 1116 0.4866 MNYLYPVKEEYFESPPPSSSSSPTSQTGGDESAVVSLPRPMEGLHEVGPPPFLTKTYDAVEDPTTSHIVSWSRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRQLLANIRRRKQPSQPSSSQQGQGHCVEVGRFGLDEEVDRLKRDKQVLMMELVKLRQQQQNTRSYLEEMEERLRGTEIKQQQMMSFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQGPSGVGESSIGIRGGRNSVKVESHVFGEYGFGVSELEVLALEMQGYGRGKREQEEEPEALESQERLEKELDEGFWEELFSEGFEGELDIPTSQDPDDEEDVNVLANRFGYLGSSPK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02037 371 MobiDBLite consensus disorder prediction 1 37 - -
Viun1g02037 371 Gene3D - 45 142 IPR036388 -
Viun1g02037 371 MobiDBLite consensus disorder prediction 239 268 - -
Viun1g02037 371 FunFam Heat shock transcription factor 1 45 142 - -
Viun1g02037 371 Coils Coil 169 203 - -
Viun1g02037 371 SUPERFAMILY "Winged helix" DNA-binding domain 48 141 IPR036390 -
Viun1g02037 371 Coils Coil 231 251 - -
Viun1g02037 371 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02037 371 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02037 371 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02037 371 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 38 258 IPR027725 -
Viun1g02037 371 SMART hsfneu3 48 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02037 371 Pfam HSF-type DNA-binding 52 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02037 371 MobiDBLite consensus disorder prediction 14 32 - -
Viun1g02037 371 ProSitePatterns HSF-type DNA-binding domain signature. 91 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02037 371 MobiDBLite consensus disorder prediction 239 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02037 Viun-Chr1 31726243 31729477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02037 25 369 HSF AT3G22830 53.298 4.66e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun1g02037 HSF_DNA-bind 4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02037 K09419 - gmx:100794264 586.26