Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02028 ATGGAGCAGTATGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCATAGGCACGAAAAGAAAATGTATGTTCTTAAAAAGATTCGTCTTGCTCGTCAAACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATTGCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATAAAAAAGGCTAATGGAGTCAACTTTTCTGAAGAGAAACTTTGCAAGTGGCTCGTTCAATTGCTGATGGCTCTTGATTACTTACATGGAAATCATATCCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTAACAAAAGATCGAGATATACGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCGAAGTCAGATATCTGGTCTTTAGGATGCTGTATCTATGAAATGGCTGCACACAAGCCAGCTTTTAAAGCACTTGACATACAATCATTGATTAACAAAATAAACAAGTGTATAGTAGCTCCCCTGCCAACTATGTATACTGCTGCTTTTCGAGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCAAAAGATTCACCTTAAATTAAATAGCGCCAGAAGAAGTACTTTTCCTTTCCAATGGCCGGAGCCAAATTATGTAAGGAGAACTCGGTTCGTGGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATACTTGTCATTTAGCAAGGACATGGCACTGAATCCTAGTATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACTTGGATTATCCACTTGTTCAGAAGAGAAAATCTATGAACTATCTGTAGGTTGTGTAGGTAACAAATACAATGCTGACACATCAAAAGCCACGAAGGTCTCAACAGTTGAAAGAGCACCAAGATTGAGGGCAGTTACAGCTTCTGCCACTGCCAAAAGGCAGACAATGGCACCATCAAAGACAACCTATACTGGTCCAAACAGAGATTCACTTCCAGTATCTAAGGCACCATCTGGAAGGTTTTCCACACCACCAAGAGCCAGGGCGACAACAAACTTGTACACCAATTTCTGTGTCCTTGGAAGTGTGGACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATTCCCAATGGCTTTCAGTGAGGATCCCTTTTTCCCTGTTCGTGGACCATCATCAACTTCAGCTCGCTGCTCTTCAAGCTCAACACGGAGTACTGCAGATTGTTCCATCACAATGGTCAAGTGTACAATTCAGGAGGACAAAGTTACTGTCCCCAACATTGTCAGTGATGCTTGCCCTGGTCCAAAGGCAACTCAATACCCTTCTGAGCATGTAAAAGCTTGTGTTTCTAGTCGCTCCTCTGCTGAGGTGGATCAGCGCCGGTTTGACACGTCATCATACCAGCAACGCGCAGAGGCTTTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTTCAACAACAAAGGTTCGATGAGCTTGGGGTGTTGCTAAAGCCGTTCGGGCCTGAGAAGGTTTCTCCTAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1812 0.4338 MEQYEILEQIGKGAFGSALLVRHRHEKKMYVLKKIRLARQTDRTRRSAHQEMELIAKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFSEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALDIQSLINKINKCIVAPLPTMYTAAFRGLVKSMLRKNPELRPTASELLNHPHLQPYIQKIHLKLNSARRSTFPFQWPEPNYVRRTRFVEPESVSTLSDQDKYLSFSKDMALNPSISGTEQVSQCSTQRALGLSTCSEEKIYELSVGCVGNKYNADTSKATKVSTVERAPRLRAVTASATAKRQTMAPSKTTYTGPNRDSLPVSKAPSGRFSTPPRARATTNLYTNFCVLGSVDSPNVSVNAPRIDKMAEFPMAFSEDPFFPVRGPSSTSARCSSSSTRSTADCSITMVKCTIQEDKVTVPNIVSDACPGPKATQYPSEHVKACVSSRSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02028 603 Gene3D Transferase(Phosphotransferase) domain 1 86 307 - -
Viun1g02028 603 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Viun1g02028 603 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02028 603 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 559 - -
Viun1g02028 603 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Viun1g02028 603 MobiDBLite consensus disorder prediction 384 420 - -
Viun1g02028 603 MobiDBLite consensus disorder prediction 384 405 - -
Viun1g02028 603 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Viun1g02028 603 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02028 603 SUPERFAMILY Protein kinase-like (PK-like) 1 324 IPR011009 -
Viun1g02028 603 CDD STKc_Nek 3 258 - -
Viun1g02028 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Viun1g02028 603 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02028 603 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02028 Viun-Chr1 31681553 31687728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02028 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 1.10e-37 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Viun1g02028 Pkinase 1.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02028 K08857 - gmx:100805201 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02028 1 31681553 31687728 Viun1g02028 1 31681553 31687728 ECH