Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01988 ATGGAAAGCCCTCACTCTCCGTCAAGGGGCTTGAAGCGTAAGCCGGAAGGAGATCTAAGCCCGGACCCAACGGATTCGGAGGCGCCGTGCCTCACGTCAAAGATCAGGAAGAAGATTCTACATCAGGTTTCTCTCCTTAATTCCGCTGCCTCAGATTGCGCCACCGTTAAGAGAGCAATTTACAACCTATCTGTACTCGCGGAAAACGAGGATCTTGCAGATGATGTACTTGATTGCGGTACTGTCCCTGCTCTGGTGAGGCATCTTCAACTGTCAGATGCAGGTAATGCTGCTGATGATAAGCCGGATAAATGTTATAATGACGGAGTTACCGAGCATGACAAGTTTGAGGTAGCCAAAGGATGTTCGCTCATGATTGAGCTTCTGGCCGTCAAACAAGAGCATCAGGACCTCATTGTAGGTGCCGGAGTCTTGCCTTGTCTAGTAGAATCTTTAAAGAGACACAAGCTCGGTACTATTTCTGAACCACTCGTTAATCTTTTAAAGAGAGCAGCTGATGCAATAACAAGCTTAGCTCATGAAAATGATGATATCAAGACCCGTGTCAGGAGGGAAGGTGGTATACCTCCTTTGGTTGAGTTGCTTGAAATCAATGATGTTAAAGTGCAGAGAGCAGCCGCACGGGCCTTGCGAACCCTTGCATTCAAAAATGATGGCAATAAAAATCAGATAGTTGAATGCAATGCATTACCCACTCTTGTACTAATGCTTGGATCGGAGGATACTAAATTACATTCTGAGGCGATTGGTGTGATTGGAAATCTGGTCCACTCTTCGCCAAATATCAAGAAAGATGTTCTTTTAGCTGGTGCTTTACAACCTGTCATTTGTTTACTAAGTTCCTGTTGTTCGGAGAGCAGAAGAGAAGCAGCCCTTTTACTTGGTCAGTTTGCAACGACAGATTCGGATTGCAAGGTTCATATTGCCCAACGAGGGGCTATTCCACCATTGGTTGATATGCTGAAGTCTTCTGATGCTGAGCTTCAAGAAATGTCATCTTTTGCACTTGGGAGGTTGGCACAGGACTCGCACAATCAAGCTGGTATTGTTCATAGTGGAGGTATAGAGCCTTTGCTTAAACTTCTTGACTCAAAGATGACGCTTGTCCAACAAAATGTTGTTTTTGCTCTCTATGGTCTTGCTGATAACGAGGACAATGTTGTTTGCATTGTTAAGGCTGATGGCTTTCAAAGACTGAAGACTGGAAATTTCAAGAGTCAACAAACTGTAGAGTGTGCAGTGAAGGCGTTAAAAAGATTAGAGGAAAAGACTCAAGGGCGAGTGTTGAAACACCTAATACGTCTTATGTGCTACCCTGAAGAAAAGGTTCAAAGACGTATAGTTATTGCTCTTGCGTACTTATGTTCTCCTCGTGATATTAAAACTATATTCATTGACAATAGTGGGTTAAATTTGCTGATGGACATGCTTAAATCTCCAAACGTAAATCAGAAGGGTGATGCTTCAGCTGCGCTTCACAATTTAGCTGCCAAAGCCCATACTTCTGTTGTCTCCCTTTTTGAACTTCCTCCTCGATCACCAAATCAACAGATGTACTTGGGCGAGGAATATGTAAACAATCCAAAACTTTCTGACGTTACATTCCTGGTTGAAGGTAAAAGCTTTTATGCTCATAGAGATTGTTTAGTTTCTTCAGACATATTTCGGGCTATGTTTGATGGCAGTTATAGGGAGAGGGAAGCAAACAATGTACTGATTCCAAATATAAAGTGGAATGTCTTTGAATTGATGATGAGATTTATATATACTGGAACGGTAGATGTCAGTTTGGATGTGGCTAAGGATCTCCTCAGAGCGGCAGATCAGTATCTTCTGGACGGTCTTAAGCGTATTTGTGAATGTGCTATTGTTCAGGAAATTTCAGTGGAAAATGTTGTACCACTGTACAAGATGGCTGAAGACTTCAATGCTGCTTCATTAAGAAATGCATGCATACTGTTTATGTTGGAGAACTTTAATGTACTGAGTCGTGAACCATGGTATAGTACAGTGTTACGTCACGTTCTACCAAACATATGCATGTTCTTCTCAGATTTACTTGCCAAATCTAATCCAGCAGACTTGTGA 2109 0.4239 MESPHSPSRGLKRKPEGDLSPDPTDSEAPCLTSKIRKKILHQVSLLNSAASDCATVKRAIYNLSVLAENEDLADDVLDCGTVPALVRHLQLSDAGNAADDKPDKCYNDGVTEHDKFEVAKGCSLMIELLAVKQEHQDLIVGAGVLPCLVESLKRHKLGTISEPLVNLLKRAADAITSLAHENDDIKTRVRREGGIPPLVELLEINDVKVQRAAARALRTLAFKNDGNKNQIVECNALPTLVLMLGSEDTKLHSEAIGVIGNLVHSSPNIKKDVLLAGALQPVICLLSSCCSESRREAALLLGQFATTDSDCKVHIAQRGAIPPLVDMLKSSDAELQEMSSFALGRLAQDSHNQAGIVHSGGIEPLLKLLDSKMTLVQQNVVFALYGLADNEDNVVCIVKADGFQRLKTGNFKSQQTVECAVKALKRLEEKTQGRVLKHLIRLMCYPEEKVQRRIVIALAYLCSPRDIKTIFIDNSGLNLLMDMLKSPNVNQKGDASAALHNLAAKAHTSVVSLFELPPRSPNQQMYLGEEYVNNPKLSDVTFLVEGKSFYAHRDCLVSSDIFRAMFDGSYREREANNVLIPNIKWNVFELMMRFIYTGTVDVSLDVAKDLLRAADQYLLDGLKRICECAIVQEISVENVVPLYKMAEDFNAASLRNACILFMLENFNVLSREPWYSTVLRHVLPNICMFFSDLLAKSNPADL 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01988 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 277 IPR000225 GO:0005515
Viun1g01988 702 Gene3D - 272 431 IPR011989 -
Viun1g01988 702 Gene3D - 432 515 IPR011989 -
Viun1g01988 702 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 8 697 IPR044282 -
Viun1g01988 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 360 402 IPR000225 GO:0005515
Viun1g01988 702 MobiDBLite consensus disorder prediction 1 29 - -
Viun1g01988 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 361 IPR000225 GO:0005515
Viun1g01988 702 Pfam BTB/POZ domain 530 632 IPR000210 GO:0005515
Viun1g01988 702 MobiDBLite consensus disorder prediction 1 21 - -
Viun1g01988 702 SMART BTB_4 538 634 IPR000210 GO:0005515
Viun1g01988 702 SUPERFAMILY POZ domain 529 631 IPR011333 -
Viun1g01988 702 SUPERFAMILY ARM repeat 167 511 IPR016024 -
Viun1g01988 702 SMART arm_5 224 264 IPR000225 GO:0005515
Viun1g01988 702 SMART arm_5 266 306 IPR000225 GO:0005515
Viun1g01988 702 SMART arm_5 308 348 IPR000225 GO:0005515
Viun1g01988 702 SMART arm_5 349 389 IPR000225 GO:0005515
Viun1g01988 702 SMART arm_5 132 180 IPR000225 GO:0005515
Viun1g01988 702 SMART arm_5 464 504 IPR000225 GO:0005515
Viun1g01988 702 SMART arm_5 69 131 IPR000225 GO:0005515
Viun1g01988 702 SMART arm_5 182 222 IPR000225 GO:0005515
Viun1g01988 702 SMART arm_5 422 463 IPR000225 GO:0005515
Viun1g01988 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 228 IPR000225 GO:0005515
Viun1g01988 702 ProSiteProfiles BTB domain profile. 538 604 IPR000210 GO:0005515
Viun1g01988 702 Gene3D - 161 271 IPR011989 -
Viun1g01988 702 Gene3D Potassium Channel Kv1.1; Chain A 529 672 IPR011333 -
Viun1g01988 702 Gene3D - 30 158 IPR011989 -
Viun1g01988 702 Pfam Armadillo/beta-catenin-like repeat 308 346 IPR000225 GO:0005515
Viun1g01988 702 Pfam Armadillo/beta-catenin-like repeat 183 221 IPR000225 GO:0005515
Viun1g01988 702 Pfam Armadillo/beta-catenin-like repeat 224 263 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01988 Viun-Chr1 31196193 31204400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01988 279 521 U-box Gene Family AT1G23030 21.344 7.17e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun1g01988 BTB 1.6e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01988 - - gmx:100783124 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01988 1 31196193 31204400 Viun1g01988 1 31196193 31204400 ECH