Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01980 ATGGTTTACCAGTTTGTATGGTTTACCAGTTTTGTATGGTTTGCCAGGTTGTGTTTGTATGTTGTGATGGCGAGAAAACTTGATCTTATCAAAGATATTGATGACAAGAAAGAAACATTGAAACTTGCTGTTAGAGTCAAAGACTTGTGGTTTGTTCAAAACCGGGATAATAGTCGTCATATGGAGATGATTCTTTTGGATCACAAGGGTGATATGATTGCTGCCATGGTAAGAAAGGAGGATTTATGTTTGTGGGAAGAAAAAGTCGTAGAGGGTCAAACCTATATAATGCATAACTTTAAGATATTGAAAAATCAAGGACAATTTCGGGTATGTGAACATCCTTACAAATTGTTGTTCATTGGGGCCACAACTATAAAACAACAACCAATTTCGAGTATTCCACTGAACGTTTACAATTTCAAAAGTATTGAAGATATAGTGGATGGAAATTACTCTGCTGATTTGGTGTATGATATTATTGGAGTGGTTGATAATGTGAGGTGTAATCCTCAGTCGAAGAATGTGGTCTTTCATATAAGGGATATGAGTTCTGCAGTGATTGGTTGTACGTTGTGGGATTCATATTACTTCAAGTTTATGAGTAATTGGAGGGGTGAACCAGATTCCTATCTTCTTGTCGTTCTGTTGACACAGGCTAAGATTAAGCCGTGTTCAGGTCGGTGGCCAGTCTCAATATCCAATTCCTGGAATGGTTCAAAGCTCTTTATGGGTGAAGAATGTGCTGAGTTAGTTCGGTTCAGGGAGCAATGGATAGAACGTTTTGGCAATGAAGTTAATCCGAGTCAAGAGTGTAGCCAATTGAGTTCACCGTCCCAGTATAGTGAACATGAGAAATTTATGTATAAAGCTGTTGTGCGTACGATATCTGAAATCACATGTATGAAAGAGGAACAATATTGTGTTACGGTTGCAAATACTGTAAAGTTTAATTTGGGTAATGATGGATGGTGTTATCCAGTATGCAATAGTTGCAGGAAGAAGACTGATGAAGTAGGTCCTTTTAAGTGTATTCTTTGTGGGTTTGATAATGAAAAACATGGAATTAGATATAAGTTAGAATTACAGGTTACAGATGGGAACAGTTACACAAATTTTGTAATGTGGGATCAAGACTGTACTAATTTGATTGGTGTATCAGCTCTTGAATTGATGAATAAGATGATTGAGGTGGATGGTGAAGATGATCCGAAATGTTTTCCAGAGGATTTAGATGCTTTGCTAGGATGTACTCTTGCTTTTAAGGTTAGAGTTCAACCAAGTAACAGATCTTCCTCTGTAATGAAAGCTTCTACCAATCCTGAAACTATTGCTTCAATTAGAAGTAAACTTGACCCTAAGATGATTAAGGACAACAGTGCTGAAGGTACATCTGATTCGAGTCACGAAGCAAACTCCAAAGAGGGACCCGAAATAGAGGAGGATAAATCAAGTAAGGCAACAGATATATGTGTTTGGAATAACCAACCAAAAACAGCCAAAGAGTCGAGGCCTAAGGCTATATGTGCTCCCAATACGCAATCTCCAGCAAGTGCTCTGAATATAAGTGGTCGTCATACAAAAAACATTGAAGAGTCAAGTCGCACACCTGTACTTGTATCCACAAAGGAACCCAAATCATCTGATGGGTCCACGAACAAATCAAAGTCTGGTGGTTCCAGTAAAAGTGCATGCCATACAGGAAAGAATAAAGAAATCCTTGAACAGGCAGGTTTTGAACGAAATACAGAAGCTGATATGTGCACGTTGACTTTGAGTGGATCCGCAGATCATGACCCTTATATTGACTTCTGTGTTACCCCTACCAAGGAACTGTTGTTCGACTTTGAGGTTGATTGTGACCATCTGGATGATATTCCAAGTGCAGAATTTTCTAGGTCCAAAACTAAAAAGCGGATGAAACAGGAGAAGCTGTAA 1938 0.3854 MVYQFVWFTSFVWFARLCLYVVMARKLDLIKDIDDKKETLKLAVRVKDLWFVQNRDNSRHMEMILLDHKGDMIAAMVRKEDLCLWEEKVVEGQTYIMHNFKILKNQGQFRVCEHPYKLLFIGATTIKQQPISSIPLNVYNFKSIEDIVDGNYSADLVYDIIGVVDNVRCNPQSKNVVFHIRDMSSAVIGCTLWDSYYFKFMSNWRGEPDSYLLVVLLTQAKIKPCSGRWPVSISNSWNGSKLFMGEECAELVRFREQWIERFGNEVNPSQECSQLSSPSQYSEHEKFMYKAVVRTISEITCMKEEQYCVTVANTVKFNLGNDGWCYPVCNSCRKKTDEVGPFKCILCGFDNEKHGIRYKLELQVTDGNSYTNFVMWDQDCTNLIGVSALELMNKMIEVDGEDDPKCFPEDLDALLGCTLAFKVRVQPSNRSSSVMKASTNPETIASIRSKLDPKMIKDNSAEGTSDSSHEANSKEGPEIEEDKSSKATDICVWNNQPKTAKESRPKAICAPNTQSPASALNISGRHTKNIEESSRTPVLVSTKEPKSSDGSTNKSKSGGSSKSACHTGKNKEILEQAGFERNTEADMCTLTLSGSADHDPYIDFCVTPTKELLFDFEVDCDHLDDIPSAEFSRSKTKKRMKQEKL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01980 645 MobiDBLite consensus disorder prediction 430 569 - -
Viun1g01980 645 SUPERFAMILY Nucleic acid-binding proteins 28 128 IPR012340 -
Viun1g01980 645 Gene3D - 279 448 IPR012340 -
Viun1g01980 645 MobiDBLite consensus disorder prediction 508 567 - -
Viun1g01980 645 Gene3D - 133 266 IPR012340 -
Viun1g01980 645 Gene3D - 25 128 IPR012340 -
Viun1g01980 645 MobiDBLite consensus disorder prediction 468 487 - -
Viun1g01980 645 SUPERFAMILY Nucleic acid-binding proteins 139 258 IPR012340 -
Viun1g01980 645 CDD RPA1_DBD_A_like 41 126 - -
Viun1g01980 645 SUPERFAMILY Nucleic acid-binding proteins 294 430 IPR012340 -
Viun1g01980 645 CDD RPA1_DBD_B_like 159 243 - -
Viun1g01980 645 MobiDBLite consensus disorder prediction 430 446 - -
Viun1g01980 645 Pfam Replication factor-A C terminal domain 314 427 IPR013955 -
Viun1g01980 645 Pfam Domain of unknown function DUF223 62 154 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01980 Viun-Chr1 31126690 31130037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01980 65 391 Core DNA Replication Machinery Family AT4G19130 24.286 1.38e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01980 - - vun:114190767 1295.8