Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01975 ATGGCTGCACCGCCAAATAGCAGGCTTCAAAGCATGTTAAGGGCTGCAGTGCAATCAGTTCAATGGACTTACACCCTCTTCTGGCAACTCTGTCCCCAACAAGGGATTTTGACGTGGGGTGATGGATATTACAACGGAGCAATTAAGACGAGGAAGACGGTTCAAGCAATGGAAGTTAGCACTGAGGAAGCTTCTCTGCAAAGAAGCGAGCAACTTCGAGAGTTATATGAATCTTTGTCTGCTGGAGAAGCGAATTCGCAAACACGAAGACCGTGTGCTGCTTTGTCTCCTGAGGATCTAACGGAATCAGAATGGTTCTATCTCTTGTGTGTCTCTTTCTCTTTTCATCCTGGTGTCGGGTTGCCCGGAACAGCATATGCCAGGAGGCAGCATATATGGCTCACTGGTGCAAACGAAGTAGAGAGCAAAGCATTTTCCAGAGCTATTCTTGCCAAGAGTGCTCATATTCAGACAGTGGTGTGCATTCCTGTGTTGGATGGCGTGGTTGAGCTGGGCACAACCGACAAGGTGGAAGAAGACCTAAATTTCATCCAACACATAAAGAGTTTCTTCATAGAACAGCACCCTCCGACGGCAAAGCCTGCACTGTCAGAGCACTCCACCTCCAATCCCACTTCTTCTTCATACCCTGTTGTTGTCACTGCCACTACTGCACCACCCAACAATATTCCCAACCAAAACGACATCGTTGATAAAGGAAAAGAAGTTAAGTTGAATTCTGAAACAGCAGGATTAGTAGTTCGTAGCAACACTTTCATACCCACCGAACTAATGGAGCTCGACACGTTGGAGGGGTTTCGGGTCGGGTCACCCGGAGATGGATCCAACCACTTGGATTCGTTCCCCACAGAGGCCTCCATGGCACTGTGTTCTGCAGGGTTGGAACTTCTTCAACTTCAACTACCACCACAACCTCCAGAACACCCTCCCTCAGAAAACATAGCACAAGGCGACACAGACACTCATTACTCTCAGACAGTGTCGAGCATCCTCCAAAAGAACTCCGGGTGGTGGCCGGACTCACCCTCCGTCAACCACCTCACTGATTCCTTCCAATCAGCCTTCAACAAATGGAACTCCGGCACCGACGAGTACCGCGGCCAGTTCCACATGACGGTGGCAGACGTCACCTCTCAGTGGCTCCTCAAGTACATTCTCTTCAGTGTCCCTTATCTTCACGCCAACCGGGTGAAGGGGAAGGGCGCCCCGTCATACGAGACAAGCCACGTGATGGCGGAGCGGCGGCGGAGAGAGAAGCTGAATGAGAGGTTTCTGATTCTGCGTTCAATGGTACCGTTCGTAACGAGAATGGACAAGGCATCGATTCTGGGAGACACGATCGAATACATAAAACAGCTGAGGGAGAAGATTGAGAGCCTGGAGGCACGTGAGCGGCACGCGGGGAAGAGGAGGGTGAGGGAGGTGGAGGTTTCGATCATAGAGGGCGATGCACTGTTGGAGGTGGAGTGTGTGCATAGGGAAGGGTTGTTGCTGGATGTGATGACATTGTTGAGGGAGTTAGGGGTTGATGTGATGATGGTGCAATCGTGGGTTAGGGATGATGGAGTTTTTGTTGCAGAGATGAGGGCCAAAGTCAAGGATAATGGGAACGGGGAAAAGGCTAGTATTGTGGAAGTCAAGAATGCCCTAAACCAGATTATACCCCGTCATATACCCCACCATGACCCTTACACACTACCTTCCAATGATCATTTTTAA 1740 0.5017 MAAPPNSRLQSMLRAAVQSVQWTYTLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAGEANSQTRRPCAALSPEDLTESEWFYLLCVSFSFHPGVGLPGTAYARRQHIWLTGANEVESKAFSRAILAKSAHIQTVVCIPVLDGVVELGTTDKVEEDLNFIQHIKSFFIEQHPPTAKPALSEHSTSNPTSSSYPVVVTATTAPPNNIPNQNDIVDKGKEVKLNSETAGLVVRSNTFIPTELMELDTLEGFRVGSPGDGSNHLDSFPTEASMALCSAGLELLQLQLPPQPPEHPPSENIAQGDTDTHYSQTVSSILQKNSGWWPDSPSVNHLTDSFQSAFNKWNSGTDEYRGQFHMTVADVTSQWLLKYILFSVPYLHANRVKGKGAPSYETSHVMAERRRREKLNERFLILRSMVPFVTRMDKASILGDTIEYIKQLREKIESLEARERHAGKRRVREVEVSIIEGDALLEVECVHREGLLLDVMTLLRELGVDVMMVQSWVRDDGVFVAEMRAKVKDNGNGEKASIVEVKNALNQIIPRHIPHHDPYTLPSNDHF 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01975 579 Pfam Helix-loop-helix DNA-binding domain 414 461 IPR011598 GO:0046983
Viun1g01975 579 SMART finulus 417 466 IPR011598 GO:0046983
Viun1g01975 579 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 412 473 IPR036638 GO:0046983
Viun1g01975 579 Coils Coil 450 477 - -
Viun1g01975 579 Gene3D - 406 476 IPR036638 GO:0046983
Viun1g01975 579 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Viun1g01975 579 PANTHER TRANSCRIPTION FACTOR TT8 3 562 - -
Viun1g01975 579 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 411 460 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01975 Viun-Chr1 31066750 31076589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01975 330 561 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 47.521 8.76e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g01975 bHLH-MYC_N 1.6e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01975 - - gmx:100780422 882.093