Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01966 ATGTATGGTGGCGCACACCACAGCAGATCTTTAAATTCTTCTCCTTCGAAGATCAATTCTCCATTTCTTCATCCATCAAAAACCCTAACCGCATTCTCTCCTACCTCACTCTCCTACTCTTCTCAATCTGTTACTCCCATGAGCTATCACATGAATAATGAGGATACACGCAGAGGTTTGAAAAGAAAGCCCCCATACATGGATCGAGGGCATGAACGGGGACCTTACAATATGAATTCTAGACCTTATGATAGGAACATGGTTCCTGATGGTTGGTTTGACTGCCCAGCACATGGACAAGAATTAGGACGCATAATCCCTTCAAAGGTTCCACTCGGTGAATCCTTCAATGATAACATTCCACGTGAAAAATATACTCCTAAGCAAGCGATTCATCAACAAAGAGTCTTAGGTCGGGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTATTATCCTCTATCAGATTGGACAAAAGAAGGAATTTCTCATGTCAAGATAAGATGCAAAGGAAGAGATGCTGTACCTGATGATGAATCTGTACAAAAATTCTGTGATGAGGTTCAAGATTTTTTCTCCCAAAGGACAAATGACAAGAAATATATACTTGTACATTGTACCCATGGGCATAATCGCACAGGCTATATGATTGTTCACTTTCTTGTGCGTACGGAATCTATATCTGTTACCGAGGCGATAAATAAATTTGCTTTGGCACGTCACCCAGGAATTTACAAGCAGGACTATATTGACGCCCTGTACATGTTTTATCGTGAAAAGAAACCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAACTCCGGATCCTGATTACCGTGGCACAACTGCCCCGGCTGTGGACAATTATGTGCACATTCCAGAACAGGAGAATATAGTCAGAAATGAAGTATTGACAACTGATGATGTTTTGGGAGATCCAATTCCTCCAAACCAGCTGCGAGAGATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGAACCCAGGGGGAAGAGGACGATCGCAGTTTCCTGGGTCACACCCTGTTTCTCTGAACAGGGACAACCTGCAACTCTTGAGACAACGATATTACTATGCCACATGGAAAGCTGATGGGACACGCTATATGATGCTGATTACTTGTGATGGATGTTATTTGATTGACAGAAAATTTCTTTTCCACAGGATCAATATGCGATTTCCTTGCAGATATTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACACTACTTGATGGGGAGATGATTATTGACAGGGATCCACATACACATAAGCAAGAGAGAAGATACCTCATCTATGATTTGATGGCAATCAATCAGGTCTCTTTGACAGAGCTGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGGGCCTTTCAAAAAATACGAATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGATTTTGGTTACTATCCACTGTATCAAAGCTCCTACATAAATTCATTCCACAACTATCGCATTCATCAGACGGTCTTGTACTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATATCCTGAGATGAACTCTGTTGATTTCCTTTGTGAGGTGGGAGCTGATGATCGTCCCATGCTTTTTCTGTTTGAACGTGGACGGAAGAAGTTCATGGAAGAGAATGTTATTTTTAAAGATGCATTAGACATTTCTTCCTATTCCGGAAAGATCATTGAATGCTACTGGGATTCCGGGGAGCATCATTGGGTCTGTATGCGGATAAGAATAGACAAAGCAACTCCGAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACTGAAGAAGTGTTATTGAATGAGATCAATAAGACAATTTGCCTACCCTTGTATGCAGACAGAATACAAAAGGATATCAAGGCTCATCAGCATATGGTATCCTCAAGGCGCAAGTGA 2040 0.4137 MYGGAHHSRSLNSSPSKINSPFLHPSKTLTAFSPTSLSYSSQSVTPMSYHMNNEDTRRGLKRKPPYMDRGHERGPYNMNSRPYDRNMVPDGWFDCPAHGQELGRIIPSKVPLGESFNDNIPREKYTPKQAIHQQRVLGRELGLVIDLTNTTRYYPLSDWTKEGISHVKIRCKGRDAVPDDESVQKFCDEVQDFFSQRTNDKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFALARHPGIYKQDYIDALYMFYREKKPEDLVCPQTPEWKRTPDPDYRGTTAPAVDNYVHIPEQENIVRNEVLTTDDVLGDPIPPNQLREMQEVCYQLLKLNPGGRGRSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDGCYLIDRKFLFHRINMRFPCRYSNGGTPERNHHYTLLDGEMIIDRDPHTHKQERRYLIYDLMAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKNTNPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVLQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGADDRPMLFLFERGRKKFMEENVIFKDALDISSYSGKIIECYWDSGEHHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEEVLLNEINKTICLPLYADRIQKDIKAHQHMVSSRRK 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01966 679 CDD RNA_5'-triphosphatase 91 257 - -
Viun1g01966 679 Gene3D Protein tyrosine phosphatase superfamily 66 282 IPR029021 -
Viun1g01966 679 PIRSF mRNA_capping_HCE 76 679 IPR017074 GO:0004484|GO:0006370|GO:0140818
Viun1g01966 679 Pfam Dual specificity phosphatase, catalytic domain 140 260 IPR000340 GO:0008138|GO:0016311
Viun1g01966 679 PANTHER MRNA-CAPPING ENZYME 83 660 - -
Viun1g01966 679 Pfam mRNA capping enzyme, catalytic domain 351 549 IPR001339 GO:0004484|GO:0005524|GO:0006370
Viun1g01966 679 CDD Adenylation_mRNA_capping 322 550 IPR001339 GO:0004484|GO:0005524|GO:0006370
Viun1g01966 679 FunFam mRNA capping enzyme, putative 310 547 - -
Viun1g01966 679 MobiDBLite consensus disorder prediction 42 81 - -
Viun1g01966 679 SUPERFAMILY Nucleic acid-binding proteins 552 661 IPR012340 -
Viun1g01966 679 MobiDBLite consensus disorder prediction 1 22 - -
Viun1g01966 679 FunFam mRNA-capping enzyme isoform A 584 656 - -
Viun1g01966 679 MobiDBLite consensus disorder prediction 7 22 - -
Viun1g01966 679 MobiDBLite consensus disorder prediction 54 70 - -
Viun1g01966 679 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 277 IPR029021 -
Viun1g01966 679 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 327 550 - -
Viun1g01966 679 SMART dsp_5 116 261 IPR020422 GO:0006470|GO:0008138
Viun1g01966 679 Gene3D DNA ligase/mRNA capping enzyme 302 547 - -
Viun1g01966 679 FunFam mRNA capping enzyme family protein 84 295 - -
Viun1g01966 679 Pfam mRNA capping enzyme, C-terminal domain 554 647 IPR013846 -
Viun1g01966 679 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Viun1g01966 679 Gene3D - 548 654 IPR012340 -
Viun1g01966 679 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01966 Viun-Chr1 31001234 31011995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01966 77 669 Protein tyrosine phosphatase (PTP) family AT3G09100 62.625 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01966 K13917 - vra:106758011 1358.58