Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01964 ATGACGATGTCAGTGATGTGTAGACCAACGCATCAGGCTCTGAAAAACGTTCCTTCCGGTGGACAAACCCAGATGATGAGGCCAAAAGAGAAGGTGGTGCTGGTGATGGGAGCAACAGGGAGCGGGAAAACGAGGTTGTCGGTGGACTTAGCGACATGTTTTCCCTCAGAAATCATAAACTCCGACAAAATGCAAGTGTACCAAGGGCTTGAGATTGTCACAAACAAAGCCACCAAAGAGGAACAGCGTGGGATCCCACATCACCTGCTGGGGACGCAGAACCCCGACACGGAGTTCACCGCCTCCGACTTCTGCGACGCCGCTTCACGCGCCATCGAGTCCATCACGCGCCGCGACAAGGTTCCGATAGTGGTGGGGGGATCCAACTCCTACATGAAGGCGCTGGTGGATAGGTTCGGACCGCGGTTCGAGTGGTGCTTTCTGTGGGTGGACGTGTCCGTGCCGGTGCTCCATTCCTACGTGGGGCAGCGCGTGGACCACATGCTCCGCTGTGGAATGGTGAACGAGTTGAGACCGTTTTTCAGCGTGAACGGCGATTACGCGCGTGGGATAAGAAAGGCCATTGGGGTTTCTGAATTCCACCCGTACTTCCGGCGGGAGGCGGCGGCGAGCGGTGAGACGAGGATGAGGCTGCTGCAGGAGGCGGTGAGGGACGTGAAGGGGAACACGTGCAACTTGGCATGCAAGCAACTTAGGAGAATCGACATGCTCCGAAGTGAGGGGTGGAAGATCCACCGCATTTGCGCCACGCCCGTGTTTCAGAAACGTGGCCGCGACGCCAATGAGGCCTGGAACAACATGGTGGCGCAACCCTGTGCCTCCATTGTTTCTCAGTTTCTCTACAGTTCTGCAAATTCTGCTTCTGGGAGAATCGCACCTTCTATGCAACCAAACTAA 918 0.5632 MTMSVMCRPTHQALKNVPSGGQTQMMRPKEKVVLVMGATGSGKTRLSVDLATCFPSEIINSDKMQVYQGLEIVTNKATKEEQRGIPHHLLGTQNPDTEFTASDFCDAASRAIESITRRDKVPIVVGGSNSYMKALVDRFGPRFEWCFLWVDVSVPVLHSYVGQRVDHMLRCGMVNELRPFFSVNGDYARGIRKAIGVSEFHPYFRREAAASGETRMRLLQEAVRDVKGNTCNLACKQLRRIDMLRSEGWKIHRICATPVFQKRGRDANEAWNNMVAQPCASIVSQFLYSSANSASGRIAPSMQPN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01964 305 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 29 287 IPR039657 -
Viun1g01964 305 Gene3D - 29 287 IPR027417 -
Viun1g01964 305 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 154 251 - -
Viun1g01964 305 MobiDBLite consensus disorder prediction 1 23 - -
Viun1g01964 305 FunFam Adenylate isopentenyltransferase 5, chloroplastic 154 251 - -
Viun1g01964 305 Pfam IPP transferase 142 239 - -
Viun1g01964 305 Pfam IPP transferase 65 141 - -
Viun1g01964 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 150 IPR027417 -
Viun1g01964 305 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01964 Viun-Chr1 30991479 30992764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01964 142 294 C2H2 Transcription Factor Family AT2G27760 30.939 4.47e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01964 K10760 - gmx:100777757 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01964 1 30991479 30992764 Viun1g01964 1 30991479 30992764 ECH
Viun1g01964 1 30991479 30992764 Viun7g01610 7 20837493 20838805 PCT