Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01938 ATGCAGTCTCTCAAGTCACACCATGCTGTTTCATCTTCTCTTTTCAATCAATTCTCTTATCAGTCTATGACATTCTTCCTCTCTTTCTCAACCAAAAGTCGTTGCCTACACTTCAACGAAACCACTTCAATAATTGATTACCTGAATTCCGACTTGCAGTTCTCCAGAACCCAATCCCTTTATGTCTCCAAACGTGTTTCAGGGTGCAGATTCCCTCAAAACCCCTTATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCCCAAAGCCAGATTCTCTCCCTGATTCGTCAAAGACCCCAGATACTGTTTACAAACATTGAGAAAATCTTGAGACCCAAAATTCAGCTCTTTCAGATGTCTGGATTCCAGGGTTACGAGTTATGCAGCTTCATTTCAAAGAATCCCTCAATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTCTACGACCAGAAAGATTTTATTCTTGTTTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGAATTATGGAGAATGTCGTCTTCTTGGAGAGTTGTGGCATTCTTGGGACTCATCTTTCATTGCTACTCAAACTTCATCCAAGGCTTTTCGTTGCACAGCGGTCTACTATTGAAAACAATGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGTTGAAACTAATTAATTGTTTTGGTTTTTCGAAGTATGAGGGCCTGCAAATGTTCAAGAGAACCCCGACTTTGTTTAGAACATCAGAGAAGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCATACAGTTATGCTGCCCAAGTCAGTCCTTATTCACCAGCCTAAGATTTTAATGTACAGCATGGAGGATCGCGTGCTTCCTCGATATAAAGTCTTCCAACTGTTGAAATCAAAAAATCTCTGCAAGAAAGTCCCCAGTTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTCTTGGACAAGTATATATCACAGTTCAGAGAAAATGCAGAGGAGTTATTAGTAGCATACAAGGGTCATTATCTGGAGGCATAA 1134 0.3942 MQSLKSHHAVSSSLFNQFSYQSMTFFLSFSTKSRCLHFNETTSIIDYLNSDLQFSRTQSLYVSKRVSGCRFPQNPLSVLTFFKQIGFSQSQILSLIRQRPQILFTNIEKILRPKIQLFQMSGFQGYELCSFISKNPSILTHSLKKTLVPSVEAIRKIVYDQKDFILVLHRCGWILPKYKRIMENVVFLESCGILGTHLSLLLKLHPRLFVAQRSTIENNVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLINCFGFSKYEGLQMFKRTPTLFRTSEKKLKVGMKFFLHTVMLPKSVLIHQPKILMYSMEDRVLPRYKVFQLLKSKNLCKKVPSYIHVLCLSEEMFLDKYISQFRENAEELLVAYKGHYLEA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01938 377 FunFam Mitochondrial transcription termination factor-like 143 363 - -
Viun1g01938 377 Gene3D Transcription termination factor 3, mitochondrial 178 363 IPR038538 -
Viun1g01938 377 Gene3D Transcription termination factor 3, mitochondrial 48 177 IPR038538 -
Viun1g01938 377 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Viun1g01938 377 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Viun1g01938 377 SMART mt_12 300 331 IPR003690 GO:0003690|GO:0006355
Viun1g01938 377 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Viun1g01938 377 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Viun1g01938 377 Pfam mTERF 151 255 IPR003690 GO:0003690|GO:0006355
Viun1g01938 377 Pfam mTERF 79 166 IPR003690 GO:0003690|GO:0006355
Viun1g01938 377 Pfam mTERF 244 352 IPR003690 GO:0003690|GO:0006355
Viun1g01938 377 PANTHER CGI-12 PROTEIN-RELATED 41 358 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01938 Viun-Chr1 30860560 30863876 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun1g01938 mTERF 4.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01938 K15032 - csin:114301363 333.183