Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01932 ATGGCCACTCTTCTTCTCAGACACTCCTCTTCCACTTCTCGCCGCCTCTTCCCCTTAGCCTCTCAAATCCACTCTTCCGTATCTCGTTCTCCTCTCTCTACTCCCAGAAGCCTCACGTTAATGTCGGAACTATTGGACACGTGGACATTGGAAGACCACGCTAACTGCGGTTTGATCAGGTGCTTGCGGATGAAGGGAAGGCTAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTATTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGATATGGAATCGCACTCTTTTGGTCTTGCAATCGATTGTGTTGTTTTCTGTTGATATGTATGCTTGCTCTATATTTCGGTTTTCAGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACACGGATTATGTTAAAAATATGATTACGGGAGCTGCCCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGTTACGTGAGCTACTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCGTTGTCTGCTTTACAGGGTACAAATGACGAGATTGGAAGACAGGCCATTCTAAAATTAATGGATGCTGTAGATGCATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCCTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTAGAGGTGTTGGGTCTAATGCAGGTATGTATGTTCATTGAGTCATTTCCTATATATAGCTGCCCTCTGATCCTTCCTGAACCATGCTTCCTCATGCTTGATGTACTTCTCAACTTCTTCTTCGAACTCTTGATAAAATTCGAAAACTGGTCGTTTAGGTTATCCCTAGCATTAGCCTCGTCATCATCTCGTAGTGGTACAGGTGTAACGTTGCTCTGCTCCCGACCGATGTGGGACACGGTTCTAAGTTTACCCTTGGCACGTCGAATGAAACTGTTGAAAGTTTCATCGTTATCAAGTGAGGTGTTATCTGAGTTCGCCGCACGACCATGTTGTCCCTTCCAAGCGCGTGTGGTCTCTACTGCTGGATTAGCAGCACGCCACCTCATCCTTGGATCATATCCAGCTTCACTTGAAGCAACTCTTGTTGGTTTGAAAAGTGTTCGATGCAAGGTATATGGTTTAGCTGTTGAGTCAGGAAATCATAAGACGGGGCTGGAGGGCCACTGCAAGGTGAAAGATGAAACTGTCACAGCAAAGAATGGTCCATCTTGTAAGGGAAAGAGATTGTAA 1467 0.4574 MATLLLRHSSSTSRRLFPLASQIHSSVSRSPLSTPRSLTLMSELLDTWTLEDHANCGLIRCLRMKGRLRLWPLMKLTRLLKRRREESPLQRYGIALFWSCNRLCCFLLICMLALYFGFQAHVEYETAKRHYAHVDCPGHTDYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRQAILKLMDAVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLGLMQVCMFIESFPIYSCPLILPEPCFLMLDVLLNFFFELLIKFENWSFRLSLALASSSSRSGTGVTLLCSRPMWDTVLSLPLARRMKLLKVSSLSSEVLSEFAARPCCPFQARVVSTAGLAARHLILGSYPASLEATLVGLKSVRCKVYGLAVESGNHKTGLEGHCKVKDETVTAKNGPSCKGKRL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01932 488 Pfam Elongation factor Tu GTP binding domain 120 257 IPR000795 GO:0003924|GO:0005525
Viun1g01932 488 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 120 260 IPR000795 GO:0003924|GO:0005525
Viun1g01932 488 PANTHER ELONGATION FACTOR TU-RELATED 120 305 - -
Viun1g01932 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 282 IPR027417 -
Viun1g01932 488 Gene3D - 117 259 IPR027417 -
Viun1g01932 488 PRINTS GTP-binding elongation factor signature 132 142 IPR000795 GO:0003924|GO:0005525
Viun1g01932 488 PRINTS GTP-binding elongation factor signature 148 159 IPR000795 GO:0003924|GO:0005525
Viun1g01932 488 PRINTS GTP-binding elongation factor signature 185 194 IPR000795 GO:0003924|GO:0005525
Viun1g01932 488 Gene3D Translation factors 262 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01932 Viun-Chr1 30830839 30836271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01932 78 296 Eukaryotic Initiation Factors Gene Family AT5G60390 32.218 1.14e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01932 K02358 - gmx:100791600 369.392