Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01930 ATGGCCACTCTTCTTCTCAGACACTCCTCTTCCACTTCTCGCCGCCTCTTCCCCTTAGCCTCTCAAATCCACTCTTCCGTATCTCGTTCTCCTCTCTCTACTCCAGTGACTCCACCTCCACCTCCTTCTATTCTTTCAATTCCAATCCATGGTGGAGATCCATGGAAGCCTCACGTTAATGTCGGAACTATTGGACACATGGATCATGGGAAGACCACGCTAACTGCGGCAATCACCAAGGTGCTTGCAGATGAAGGGAAGGCTAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCAGATTATGTTAAAAATATGATTACGGGAGCTGCCCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGAACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGATGTTGTTGATGATCCAGAGTTGTTGGAGCTTGTAGAAATGGAGTTACGTGAGCTACTGTGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCGTTGTCTGCTTTACAGGGTACAAATGACGAGATTGGAAGACAAGCCATTCTAAAATTAATGGATGCTGTAGATGCATACATTCCTGACCCTATTCGCCAACTTGACAAGCCCTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTAGAGGTGTTGGGTCTAATGCAGGTATGTATGTTCATTGAGTCATTTCCTATATATAGCTGCCCTCTGATCCTTCCTGAACCATGCTTCCTCATGCTTGATGTACTTCTCAACTTCTTCTTCGAACTCTTGATAAAATTCGAAAACTGGTCGTTTAGGTTATCCCTAGCATTAGCCTCGTCATCATCTCGTAGTGGTACAGGTGTAACATTGCTCTGCTCCCGACCGATGTGGGACACGGTTCTAAGTTTACCCTTGGCACGTCGAATGAAACTGTTGAAAGTTTCATCGTTATCAAGTGAGGTGTTATCTGAGTTCGCTGCACGACCATGTTGTCCCTTCCAAGCGCGTGTGGTCTCTACTGCTGGATTAGCAGCACGCCACCTCATCCTTGGATCATATCCAGCTTCACTTGAAGCAACTCTTGTTGGTTTGAAAAGTGTTCGATGCAAGGTATATGGTTTCTCGACAAACTTGGTTAAGCTCAAATGA 1362 0.4596 MATLLLRHSSSTSRRLFPLASQIHSSVSRSPLSTPVTPPPPPSILSIPIHGGDPWKPHVNVGTIGHMDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDEPMPQTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLCFYKFPGDEIPIIRGSALSALQGTNDEIGRQAILKLMDAVDAYIPDPIRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLGLMQVCMFIESFPIYSCPLILPEPCFLMLDVLLNFFFELLIKFENWSFRLSLALASSSSRSGTGVTLLCSRPMWDTVLSLPLARRMKLLKVSSLSSEVLSEFAARPCCPFQARVVSTAGLAARHLILGSYPASLEATLVGLKSVRCKVYGFSTNLVKLK 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01930 453 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 56 252 IPR000795 GO:0003924|GO:0005525
Viun1g01930 453 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Viun1g01930 453 PRINTS GTP-binding elongation factor signature 60 73 IPR000795 GO:0003924|GO:0005525
Viun1g01930 453 PRINTS GTP-binding elongation factor signature 140 151 IPR000795 GO:0003924|GO:0005525
Viun1g01930 453 PRINTS GTP-binding elongation factor signature 124 134 IPR000795 GO:0003924|GO:0005525
Viun1g01930 453 PRINTS GTP-binding elongation factor signature 104 112 IPR000795 GO:0003924|GO:0005525
Viun1g01930 453 FunFam Elongation factor Tu 53 251 - -
Viun1g01930 453 Gene3D Translation factors 254 304 - -
Viun1g01930 453 NCBIfam small GTP-binding protein domain 59 194 IPR005225 GO:0005525
Viun1g01930 453 Gene3D - 53 251 IPR027417 -
Viun1g01930 453 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 97 112 IPR031157 -
Viun1g01930 453 PANTHER ELONGATION FACTOR TU-RELATED 56 297 - -
Viun1g01930 453 Pfam Elongation factor Tu GTP binding domain 56 249 IPR000795 GO:0003924|GO:0005525
Viun1g01930 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 274 IPR027417 -
Viun1g01930 453 CDD EF_Tu 57 251 IPR041709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01930 Viun-Chr1 30799751 30803186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01930 56 288 Eukaryotic Initiation Factors Gene Family AT5G60390 34.091 2.12e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01930 K02358 - gmx:100791600 475.707