Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01929 ATGCAGTCTCTCAAGTCACACCATGCTGTTTCATCTTCTCTTTTCAATCAATTCTCTTATCAGTCTATGACATTCTTCCTCTCTTTCTCAACCAAAAGCCGTTGCCTACACTTCAACGAAACCACTTCAATAATTGATTACCTGAATTCCGACTTGCAGTTCTCCAGAACCCAATCCCTTTATGTCTCCAAACGTGTTTCAGGGTGCAGATTCCCTCAAAACCCCTTATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCCCAAAGCCAGGTTCTCTCCCTGATTCGTCAAAGACCCCAGATACTGTTTACAAATGTTGAGAAAATCTTGAGACCCAAAATTCAACTCTTTCAGATGTCTGGATTCCAGGGTTACGAGTTATGCAGCTTCATTTCAAAGAATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTCTACGACCAGAAAGATTTTATTCTTGTTTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGAATTATGGAGAATGTCGTCTTCTTGGAGAGTTGTGGCATTCTTGGGACTCATCTTTCATTGCTACTCAAACTTCATCCAAGGCTTTTCGTTGCACAGCGGTCTACTATTGAAAACAATGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCTATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGTTGAAACTAATTAATTGTTTTGGTTTTTCGAAGGATGAGGGCCTGCAAATGTTCAAGAGAACTCCGACTTTGTTTAGAACATCAGAGAAGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCATACAGTTATGCTGCCCAAGTCAGTCCTTATTCACCAGCCTAAGATTTTAATGTACAGCATGGAGGATCGCGTGCTTCCTCGATATAAAGTCTTCCAACTGTTGAAATCAAAAAATCTCTGCAAGAAAGTCCCCAGTTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTCTTGGACAAGAACTCATCCAGTTCAAAGGTTCATGGAAAGGCAACAAGAGTTGCTTCAAGTGAAGCTGGATATGATCCAAGGATGAGGTGGCGTGCTGCTAATCCAGCAGTAGAGACCACTCGCGCTTGGAAGGGACAACATGGTCGTGCGGCGAACTCAGATAACACCTCACTTGATAACGATGAAACTTTCAACAGTTTCATTCGACGTGCCAAGGGTAAACTTAGAACCGTGTCCCACATCGGTCGGGAGCAGAGCAACGTTACACCTGTACCACTACGAGATGATGACGAGGCTAATGCTAGGGATAACCTAAACGACCAGTTTTCGAATTTTATCAAGAGTTCGAAGAAGAAGTTGAGAAATACATCAAGCATGAGGAAGCATGGTTCCTTCAACAGACGGTGA 1461 0.4162 MQSLKSHHAVSSSLFNQFSYQSMTFFLSFSTKSRCLHFNETTSIIDYLNSDLQFSRTQSLYVSKRVSGCRFPQNPLSVLTFFKQIGFSQSQVLSLIRQRPQILFTNVEKILRPKIQLFQMSGFQGYELCSFISKNPSILTHSLKKTLVPSVEAIRKIVYDQKDFILVLHRCGWILPKYKRIMENVVFLESCGILGTHLSLLLKLHPRLFVAQRSTIENNVSRAVDLGFRENSRMLVYAIHTLSCLSDKTFERKLKLINCFGFSKDEGLQMFKRTPTLFRTSEKKLKVGMKFFLHTVMLPKSVLIHQPKILMYSMEDRVLPRYKVFQLLKSKNLCKKVPSYIHVLCLSEEMFLDKNSSSSKVHGKATRVASSEAGYDPRMRWRAANPAVETTRAWKGQHGRAANSDNTSLDNDETFNSFIRRAKGKLRTVSHIGREQSNVTPVPLRDDDEANARDNLNDQFSNFIKSSKKKLRNTSSMRKHGSFNRR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01929 486 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Viun1g01929 486 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Viun1g01929 486 SMART mt_12 300 331 IPR003690 GO:0003690|GO:0006355
Viun1g01929 486 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Viun1g01929 486 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Viun1g01929 486 MobiDBLite consensus disorder prediction 455 470 - -
Viun1g01929 486 PANTHER CGI-12 PROTEIN-RELATED 41 354 IPR003690 GO:0003690|GO:0006355
Viun1g01929 486 MobiDBLite consensus disorder prediction 471 486 - -
Viun1g01929 486 Pfam mTERF 151 255 IPR003690 GO:0003690|GO:0006355
Viun1g01929 486 Pfam mTERF 79 231 IPR003690 GO:0003690|GO:0006355
Viun1g01929 486 Pfam mTERF 245 352 IPR003690 GO:0003690|GO:0006355
Viun1g01929 486 Gene3D Transcription termination factor 3, mitochondrial 47 176 IPR038538 -
Viun1g01929 486 Gene3D Transcription termination factor 3, mitochondrial 177 361 IPR038538 -
Viun1g01929 486 MobiDBLite consensus disorder prediction 437 486 - -
Viun1g01929 486 FunFam Mitochondrial transcription termination factor-like 143 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01929 Viun-Chr1 30790972 30795411 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun1g01929 mTERF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01929 K15032 - vvi:100268158 300.441