Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01916 ATGCCACTGTTCCCGATCCTTGTCACAATCTTCCTCGCTCTCCCTGCGCTTTCCCTCTCCGATTCCTGTCCTCTCAACATCAGCCTCCTCCATTCGAGATCCTCATCGGACTCCAAGGCACGGTGGTGCGGTTACATCTTCAAATCCCTTCGTATTCTTCAATCCGATTACCTCCACCGCACCGGTTTCTTCCCTCCTTCCAACGCCTCCTTCTCCTGCTGGATCGCTCTCCAGAATCACACCCGCCAATACGACATTCGTTCCTCCTGCAACCTCCATTCCTCTTCCCTTTCCCTCTCCTGCAACAACATCACCAACCAATCCCAATTCGAACACCATTTTCCTCTCTCAGCTCTTCAACCCATACGGAATACTTGTAACCAATCTCTCAACAGTGCCGCATCTTGTACTCTCTGCACCAACGCTTTGTCCAACTTGGATTCCCTCCTCCCGGACAATACCACTGATTGCAAGACTATTGCTTCTATCTATGCTGCTTCCTTCTCCGACCTGCAACACCCCGGAACTGCTGAGTGTCTGTTCAACGTTGGTTTTCCTTCTGGTAAGCGTCGTCGAACCATTCTTATTGCGGTTTTTTGTACGCTGGCCTTCTTCTTGTTGGTCTTTGGTGTTGTCTGGGCTTACTTTAGATTGAAGCAGAAGAAGAAGGATATTTGTAAAACTGAGATGGGTTTGGGTTCTGGGTTGGATTCTATGAACCAGAGTACTACTTTGATTAGGTTCAGTTTTGATGAGATTAAAAAGGCTACAAGGAATTTCTCCGGCGATAACATAATTGGGAAGGGGGCTTATGGGAATGTTTATAGAGGGGTTCTGTTTGATGGGACTCAGGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATCCTAGCTTCACTCATGAAGTTGAGGTTATTGCGAGCGTTAGGCATGTGAACCTTGTTGCCTTAAGAGGATATTGTACTGCCACTACTAATTTAGAGGGCCACCAGAGGATTATCGTCACTGATTTGATGGAGAATGGGAGCGTTCATGATCATTTATTTGGTTCTGCTAAGCAGAAACTGAGTTGGCCAATTCGTCAAAAGATTGCTCTAGGCACTGCTAGGGGGTTGGCTTATTTGCACTACGGGGCTCAACCTTCCATCATCCATAGGGATATTAAAGCTAGTAACATACTTCTGGACCGCAAATTTGAAGCGAAAGTAGCAGATTTTGGGTTAGCGAAGTTCAAACCTGAGGGAATGACGCATATGAGCACTAGAGTGGCTGGAACCATGGGGTATGTTGCACCTGAGTATGCTTTGTATGGACAGTTAACTGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAGGGCTCTTCAAATTGACACTGATGGGAAACCCTCTGCAGTCACTGACTTTGCTTGGTCATTGGTTAGGAATGGTAGAGCTTTGGATGTTATTGAAGATGCTATGCCAGAACTTGGTCCAGTAGACATTCTTGAGAAGTATGTTTTTGTTGCTGTACTATGTTGTCATCCACAACTATATGCTAGGCCAACGATGGACCAGGTTGTTAAAATGTTAGAGACGGAGGAATCAGTGTCCTCATTAATTGAACAGCCACTGTCTTGTATTGCTGGGAGGATTCATACTGAGAAATCTGTGTAG 1686 0.4573 MPLFPILVTIFLALPALSLSDSCPLNISLLHSRSSSDSKARWCGYIFKSLRILQSDYLHRTGFFPPSNASFSCWIALQNHTRQYDIRSSCNLHSSSLSLSCNNITNQSQFEHHFPLSALQPIRNTCNQSLNSAASCTLCTNALSNLDSLLPDNTTDCKTIASIYAASFSDLQHPGTAECLFNVGFPSGKRRRTILIAVFCTLAFFLLVFGVVWAYFRLKQKKKDICKTEMGLGSGLDSMNQSTTLIRFSFDEIKKATRNFSGDNIIGKGAYGNVYRGVLFDGTQVALKRFKNCSVAGDPSFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSVHDHLFGSAKQKLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDRKFEAKVADFGLAKFKPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKRALQIDTDGKPSAVTDFAWSLVRNGRALDVIEDAMPELGPVDILEKYVFVAVLCCHPQLYARPTMDQVVKMLETEESVSSLIEQPLSCIAGRIHTEKSV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01916 561 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 341 542 - -
Viun1g01916 561 SMART serkin_6 260 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01916 561 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 548 - -
Viun1g01916 561 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 220 339 - -
Viun1g01916 561 Pfam SPARK 20 148 IPR043891 -
Viun1g01916 561 ProSitePatterns Protein kinases ATP-binding region signature. 266 288 IPR017441 GO:0005524
Viun1g01916 561 CDD STKc_IRAK 266 535 - -
Viun1g01916 561 Pfam Protein tyrosine and serine/threonine kinase 264 534 IPR001245 GO:0004672|GO:0006468
Viun1g01916 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
Viun1g01916 561 Gene3D Transferase(Phosphotransferase) domain 1 341 547 - -
Viun1g01916 561 ProSiteProfiles Protein kinase domain profile. 260 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01916 561 SUPERFAMILY Protein kinase-like (PK-like) 237 535 IPR011009 -
Viun1g01916 561 Gene3D Phosphorylase Kinase; domain 1 227 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01916 Viun-Chr1 30699800 30702114 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01916 7 559 Receptor kinase-like Gene Family AT2G48010 55.190 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Viun1g01916 PK_Tyr_Ser-Thr 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01916 - - vun:114194863 1097.8