Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01914 ATGTCCCTTCCCTTCTATTTCTCCCTCTCTTTTATTTTCTCTCTTTCATTTATTCTTCCGCCTCCTTCTCTCGCCGCCAACGAAACCGTTCCGTGTCCATTGAACATCACCGTGCTCCGCGTGGTGGGCGGCGGCGCCCGTCCCTCCTTCGACTCCGGCACGCAGTGCCATTACATCCTGCAGGCCCTCCACCTCCTCCAGGCGGACTACCTCCGCCGCAGCAACCTCTTCGTGCCGCCGCTCAACGCCTCCGAGTCCTGCTGGGCCTCCTTCCAGTCCTTCATCAACGAGTTCGACCCGAGCATCGATATCCGCTCCTCCTGCGGACTCAAAACCGAGTGGATCTCCCAAGGCTGCATGAACATCACCACCAAACAGCAGTTCGAAGACACCGCCCCCACCGCCGCAATCCAGGCCGTCCAAGGCAACTGCAACCAGTCCCTCGAAAACAACGCCCCCTGCGCCCTCTGCACTACCAAACTCTCCAACCTTCTCTCCTACTTGACCGGCCCAACCGACGGGAACGTCTCCGATTGCCGAGCCTATACCTCCATCTACGCCGCCTCTCTCTCTGACCAATATGGCGCCACTGACCCCGGAACCGCCAAGTGCCTCTTCGGCCTCGATTTTTCCTCCCCCGGCTCCAGCGGTAAGCGCCGAACCATCATTATCGTGGTTTCCGTTTTCTGTTTTCTGGCTTTGCTTGTTTTCGCCGGGGTTTGGACTTACATTAGATGGAAGAAGAGGAACGAGTTTGCGGGAGGGAAGGGTGTTGGAACATCCGAACTTGGTTTGGGTTTGGGTTCTGGGTTGGATTCCATGAATCAGAGTACGACTTTGATTAGGTTCACTTTTGATGAGATTAGAAAGGCTACTAGGAACTTCTCCAGGGATAACATGATCGGGAGTGGGGGTTATGGGAACGTTTACAAAGGAATCTTGCTGGATGGTAGTCCCGTTGCTTTCAAAAGGTTCAAGAATTGTTCTGTTGCCGGGGATGCAAGCTTCACTCACGAGGTTGAGGTTATTGCGAGTGTTCGCCATGTGAATCTTGTTACCTTAAGAGGTTATTGTACTGCCACCACCAATTTAGAGGGGCACCAGAGGATTATCGTGACTGATTTGATGGAAAATGGGAGTCTTTATGATCATTTATTTGGTTCTTCCAAGAAGAATCTGAGTTGGCCTATTCGTCAAAAGATTGCTCTGGGGACCGCTAGAGGGTTGGCTTATTTGCATTATGGGGCTCAACCTTCCATCATTCACAGAGATATCAAAGCTAGTAACATTCTTCTGGACCATAAGTTTGAGGCGAAGGTGGCGGATTTCGGGTTGGCGAAGTTCAACCCAGAGGGAATGACGCATATGAGCACTAGAGTGGCTGGGACTATGGGGTATGTTGCTCCTGAGTATGCCTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTATGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACGAACGATGATGGCCAACCCTCTGCACTCACCGACTTTGCTTGGTCGTTGGTTAGAAACGGTAGTGCTCTGGATGTTGTTGAAGATGGCATTCCAGAGGCAGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGCTGTGTTCTCATCCACAGCTATACGCTAGACCGACAATGGACCAGGTTGTTAAAATGCTGGAGACAGATGAATCGGTTCCTTCGTTAACGGATAGGCCAATTCCTTTTATTGCTGGCAGGATTGACATTGAAAAATCTGCTCTCAGTAACTCGGGTCAGCTCTGCAGTCCAACCGGTTATCAAGCATATACATTACAAGGTCGACGCAGATCTATTTCCAAAGAAGAAGAAGAAAGTTCAGTGGCTGATACTGTTACCACAGAATGA 1914 0.5052 MSLPFYFSLSFIFSLSFILPPPSLAANETVPCPLNITVLRVVGGGARPSFDSGTQCHYILQALHLLQADYLRRSNLFVPPLNASESCWASFQSFINEFDPSIDIRSSCGLKTEWISQGCMNITTKQQFEDTAPTAAIQAVQGNCNQSLENNAPCALCTTKLSNLLSYLTGPTDGNVSDCRAYTSIYAASLSDQYGATDPGTAKCLFGLDFSSPGSSGKRRTIIIVVSVFCFLALLVFAGVWTYIRWKKRNEFAGGKGVGTSELGLGLGSGLDSMNQSTTLIRFTFDEIRKATRNFSRDNMIGSGGYGNVYKGILLDGSPVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKNLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGKKALQTNDDGQPSALTDFAWSLVRNGSALDVVEDGIPEAGPPEVLEKYVLIAVLCSHPQLYARPTMDQVVKMLETDESVPSLTDRPIPFIAGRIDIEKSALSNSGQLCSPTGYQAYTLQGRRRSISKEEEESSVADTVTTE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01914 637 SUPERFAMILY Protein kinase-like (PK-like) 272 570 IPR011009 -
Viun1g01914 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Viun1g01914 637 Pfam Protein kinase domain 296 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01914 637 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 260 374 - -
Viun1g01914 637 ProSiteProfiles Protein kinase domain profile. 295 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01914 637 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 140 626 - -
Viun1g01914 637 CDD STKc_IRAK 301 570 - -
Viun1g01914 637 Pfam SPARK 29 179 IPR043891 -
Viun1g01914 637 Gene3D Phosphorylase Kinase; domain 1 269 374 - -
Viun1g01914 637 MobiDBLite consensus disorder prediction 616 637 - -
Viun1g01914 637 SMART serkin_6 295 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01914 637 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 376 577 - -
Viun1g01914 637 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Viun1g01914 637 Gene3D Transferase(Phosphotransferase) domain 1 376 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01914 Viun-Chr1 30676244 30678691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01914 23 616 Receptor kinase-like Gene Family AT2G48010 62.270 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Viun1g01914 Pkinase 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01914 - - gmx:100819453 1069.68