Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01913 ATGGAGGACGAGGTGGATTCCCCTGTTGGCGTTCTTGAAGATTATTTTTTCAAGAGTTCAGAATCAGAAACTAGTTCTTCGAAAGAACCTGGTACTACGGATTCTGATAAGTCAAAGCCCGGTTCTAAGTGGCATGCGTTTCTTCAATTGTTGAGGGTCAAATCGAAGAAGCCGGTGGCCACATTGTATCCTCTAAGTGTCCTCAAACTCTCCAGAATATTCAGCAGTGGCATGAGGGAGACTGTGATAGATTCTGATTCTTCCTTTCATAGTTCACCCTGGAAGATCTTCACTCACCATGAGATACAAATTGCAACCAATTACTTCGCCCAAGAAAATTGTATTGGAAAAGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTACCAAATAATCAGCTGGTGGCTATTAAACGATTGACACGTGGAGCAGAAAATGAAACTATAGGGGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCATCCCAATACTGCTAAATTAGTTGGCTATGGAGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAGTGCTGAATGGTTCCAAGGAGAAGCTACCATGGTCTGTTAGGCAGAAAATAGCATTAGGAACAGCCAAGGGTATATTGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCACAGAGATATAAAAGCATCAAATATCTTGCTCACTGAGGACTTTGAGCCGCAGATCTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACCCACCACAGCGTTTCAAAAATCGAAGGGACTTTTGGTTACCTTGCTCCAGAATACTTGCTTCATGGGATAGTGGATGAGAAAACAGATGTTTTTGCCTTTGGTGTAGTGCTATTAGAATTAGTCACTGGGCGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAGAACCTTTTCTGAAAAAGAACAGCATTAGGGAGCTGATTGATCCTTCACTTGCTGATTATGTTTTTGACTGTCGGCAGATTAAAATTATGCTTTTCACAGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGCCCCTCCATGAACCAGGTTGTGCAGCTTCTGAATGGTAACGTTAGCGGCTCTAGGTTCACCAAGAAATCTCAACTTCCATTCACTCGAAAGGACTTTCTAGAAGAGTTCATTGATTCTGATTAA 1218 0.4171 MEDEVDSPVGVLEDYFFKSSESETSSSKEPGTTDSDKSKPGSKWHAFLQLLRVKSKKPVATLYPLSVLKLSRIFSSGMRETVIDSDSSFHSSPWKIFTHHEIQIATNYFAQENCIGKGGYAEVYKGCLPNNQLVAIKRLTRGAENETIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWSVRQKIALGTAKGILYLHEGCQRRIIHRDIKASNILLTEDFEPQICDFGLAKWLPENWTHHSVSKIEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAEPFLKKNSIRELIDPSLADYVFDCRQIKIMLFTASLCIQQSSIRRPSMNQVVQLLNGNVSGSRFTKKSQLPFTRKDFLEEFIDSD 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01913 405 ProSiteProfiles Protein kinase domain profile. 109 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01913 405 MobiDBLite consensus disorder prediction 16 41 - -
Viun1g01913 405 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Viun1g01913 405 SUPERFAMILY Protein kinase-like (PK-like) 88 375 IPR011009 -
Viun1g01913 405 Gene3D Transferase(Phosphotransferase) domain 1 186 391 - -
Viun1g01913 405 Gene3D Phosphorylase Kinase; domain 1 80 183 - -
Viun1g01913 405 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 186 389 - -
Viun1g01913 405 SMART serkin_6 109 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01913 405 PANTHER OS08G0249100 PROTEIN 6 398 IPR046958 -
Viun1g01913 405 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 79 183 - -
Viun1g01913 405 Pfam Protein kinase domain 111 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01913 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01913 Viun-Chr1 30667732 30670974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01913 97 377 Receptor kinase-like Gene Family AT1G53420 42.215 3.03e-66 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun1g01913 Pkinase 4.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01913 - - gmx:100818913 687.952