Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01881 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGGCCCCCCTGCGAGCCAATACACTGCACCACCTAGGGGTAGCACATACGGCGGAGGAGGAAGTGCTAGAGGAGAGCCTAGGGGTATTGCAAAGAGTGCCCCACAGAAAGTGTTGCCGATTGAGATACCCTCTATTCCATTGGAAGAGTTAAATAGGTTAACAGATAACTTTGGTGCAAAGGCTTTCATCGGCGAAGGTTCCTACGGACGGGTTTACTATGCAAAATTGAGTGATGGAACTGATGCTGCTATTAAGAAGCTGGATAACAGTTCTTCCCCAGAACCTGACTCCGATTTCGGCACTCAGTTATCGGTTGTTTCAAGACTGAAGCATGACAACTTTGTCGAGTTGATTGGATACTGTCTAGAGGCAGAAAACAGAATTTTGGTATACCAACATGCAGGCCTTGGTTCTTTGCATGACGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCTGGTCCAGTTCTAAATTGGAACCAAAGAGCCAAAATTGCGTTTGGTGCAGCAAAAGGACTTGAGTTTCTTCACGAAAAGGTTCAACCTTCTATTGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGGCCAAGATAGCAGATTTTAGCTTGACAAATCAGTCTTCTGATACAGCCGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGTGTTGTGCTATTAGAACTCTTGACTGGAAGAAAACCAGTAGATCACACAATGCCGAAAGGACAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGCGAGGACAAAGTGAAACAATGTGTTGATCCTAAGCTAAACAACGAGTATCCACCAAAGGCTATTGCCAAGTTGGCAGCAGTGGCAGCGCTTTGTGTTCAGTATGAAGCTGACTTCAGACCAAACATGACGATTGTTGTGAAAGCTCTTCAGCCACTTCTCAATGCAAAACCGCCTGGTCCTGAACCTCATGCTTGA 1089 0.461 MLCCGGAEEESSGPPASQYTAPPRGSTYGGGGSARGEPRGIAKSAPQKVLPIEIPSIPLEELNRLTDNFGAKAFIGEGSYGRVYYAKLSDGTDAAIKKLDNSSSPEPDSDFGTQLSVVSRLKHDNFVELIGYCLEAENRILVYQHAGLGSLHDVLHGRKGVQGAEPGPVLNWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPEPHA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01881 362 Gene3D Phosphorylase Kinase; domain 1 42 145 - -
Viun1g01881 362 ProSiteProfiles Protein kinase domain profile. 69 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g01881 362 Gene3D Transferase(Phosphotransferase) domain 1 148 355 - -
Viun1g01881 362 Pfam Protein tyrosine and serine/threonine kinase 74 347 IPR001245 GO:0004672|GO:0006468
Viun1g01881 362 SUPERFAMILY Protein kinase-like (PK-like) 46 347 IPR011009 -
Viun1g01881 362 SMART tyrkin_6 69 347 IPR020635 GO:0004713|GO:0006468
Viun1g01881 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 37 355 - -
Viun1g01881 362 MobiDBLite consensus disorder prediction 1 44 - -
Viun1g01881 362 PIRSF ILK 33 354 - -
Viun1g01881 362 FunFam probable protein kinase At2g41970 42 145 - -
Viun1g01881 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Viun1g01881 362 ProSitePatterns Tyrosine protein kinases specific active-site signature. 197 209 IPR008266 GO:0004672|GO:0006468
Viun1g01881 362 FunFam PTI1-like tyrosine-protein kinase 3 147 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01881 Viun-Chr1 30340598 30343165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01881 1 348 Receptor kinase-like Gene Family AT4G02010 42.735 1.35e-85 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Viun1g01881 PK_Tyr_Ser-Thr 4.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01881 - - gmx:100786291 645.58